PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531426.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 534aa    MW: 58315.9 Da    PI: 5.6275
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.46.2e-1281545171374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+ L++cA+ ++ gd+ la +l+ +++ l s       + ++a yf  AL +r++          p  +t +++  e+   ++ ++e++P+lkf
  XP_023531426.1 154 LVHMLVTCADSIHRGDFPLAGSLIVEMQSLLSGINtdCGIGKVAGYFIDALTRRVFT---------PHDTTINTTGYENELLYHHYYEACPYLKF 239
                     689*************************99554431259*****************9.........4444444557888889999********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+s+ +++l+e+g rLa++A++++v+f f+ ++a+rled
  XP_023531426.1 240 AHFTANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSSDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLED 334
                     *********************************************************************************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+E++aVn+++qlhrll ++  ++s+ + vL  ++sl+Pk+v+vveqeadhn++ Fl+rf+eal yys++fdslea        ++
  XP_023531426.1 335 VKPWMLQVNPKETVAVNSIMQLHRLLGNNNRSSSAMEMVLGWIRSLNPKIVTVVEQEADHNQTGFLDRFTEALFYYSTMFDSLEACC---MMPEK 426
                     ***********************************************************************************9995...55566 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +++l+rei+nvv+ceg +r+erhe l kWr+rl++aGF++++l+++a kqa++ll  ++ +g++vee++g+l+lgW++rpL+++SaW+
  XP_023531426.1 427 ALAEMYLQREICNVVSCEGPARVERHEPLVKWRSRLRQAGFRALHLGSNAFKQASMLLTLFSAEGFSVEENEGCLTLGWHSRPLIAASAWQ 517
                     677788************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MAPFDSAASS GTSSSGSSSS SSSTVTKPQD IDGLLAGAGY KVRASDLHHV AQRLERLESA  60
MVNSSSEISQ LASETVHYNP SDIASWVDSI LSELNQTTSL PSDILDFPDL ISGSNQTAGN  120
VSWTDPCVAA QHQNLSHNQL TVVTAMEEDS GIKLVHMLVT CADSIHRGDF PLAGSLIVEM  180
QSLLSGINTD CGIGKVAGYF IDALTRRVFT PHDTTINTTG YENELLYHHY YEACPYLKFA  240
HFTANQAILE AFDGHDCVHV IDFNLMHGLQ WPALIQALAL RPGGPPLLRL TGIGPPSSDG  300
RDSLREIGLR LAELARSVNV RFAFRGVAAS RLEDVKPWML QVNPKETVAV NSIMQLHRLL  360
GNNNRSSSAM EMVLGWIRSL NPKIVTVVEQ EADHNQTGFL DRFTEALFYY STMFDSLEAC  420
CMMPEKALAE MYLQREICNV VSCEGPARVE RHEPLVKWRS RLRQAGFRAL HLGSNAFKQA  480
SMLLTLFSAE GFSVEENEGC LTLGWHSRPL IAASAWQAAP PPDATANHPF GGTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-141GRAS family protein