PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531417.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family RAV
Protein Properties Length: 323aa    MW: 36628.2 Da    PI: 8.9539
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-104491154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ +++
  XP_023531417.1 44 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIRIR 91
                    799***6.666899****999......44**********************9987 PP
2B386.52.3e-27166267188
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k+ltpsdv+k++rlv+pkk+a ++               +    ++++l++ d++ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++
  XP_023531417.1 166 FQKELTPSDVGKLNRLVIPKKYAVKYfphvsastienvervD--DDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTI 258
                     99*************************999998886666432..338899********************************************* PP

                     EEEE-SS.S CS
              B3  81 vFkldgr.s 88 
                      F+l +  +
  XP_023531417.1 259 AFYLCEAaK 267
                     ***875434 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MKQKWPNTIS ETRVNAIAEG SESSCITCPF PANGCSKQGR SLTSKFKGVV PQQNGHWGAQ  60
IYANHQRIWL GTFKSENEAA MAYDSAAIRI RSGDCHRNFP WTKVTIEEPN FQTLYTTEAL  120
LNMLKDGSYT TKFAEYLRDR SESAQTSAGP SAANINNNEG TIKQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPHVSASTI ENVERVDDDR DVQLIFFDKT MRQWKFRYCY WKSSQSYVFT  240
RGWNRFVKEK QLKANDTIAF YLCEAAKTND AKTTFCVVDV KNRNGASSVE NEAEELLSPK  300
NKDDGLKGDA EVEGFKLFGV HIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-105RAV family protein