PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531411.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 906aa MW: 100114 Da PI: 8.4015

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.3	2.4e-19	813	895	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e + Li++r +++ r++ k +++lWee+s+ m g++rsp qCk+ w +l ++y++ ++ek ++++pyf++++a XP_023531411.1 813 KWKPEEMKRLIKLRGQLHARFQVPKGRMALWEEISRSMLGDGMNRSPGQCKSLWASLVQKYEQDSKSEKTI----KKSWPYFEEMDA 895 7***********************************************************999999985....456*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence
MQLEFLGGSS VLRSPHLGPY RHTMAAFGAL SLCPCSPLPR PRTIYCCSGT PKVLGNNVSR 60 VHRKRPGGLE GARKSMEDSV KRKMEQFYEG SDGPPLRVLP IGGLGEIGMN CMLVGNYDRY 120 ILIDAGVMFP DHDELGVQKI IPDTTFIRRW SHKIEAVVIT HGHEDHIGAL PWVIPALDSH 180 TPIYASSFTV ELIKKRLKEN GIFVPSRLKV FKMRKRFTAG PFEIEPIRVT HSIPDCCGLV 240 LRCADGTILH TGDWKIDESP LDGKVFDRET LEELSKEGVT LMMSDSTNVL SPGRTISESV 300 VADALLRRIS AAKGRVITTQ FASNIHRLGS VKAAADLTGR KLVFVGMSLR TYLEAAWKDG 360 KAPIDPSTLV KVEDIEAYAP KDLLIVTTGS QAEPRAALNL ASYGSSHSLK LSKEDMILYS 420 AKVIPGNESR VMKMLNRISE IGSNIIMGKN ELLHTSGHAY RGELEEILQI VKPQHFLPIH 480 GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV LSNGFTSLGK ENLQLKYSDG 540 DKAFGSSSEL FVDERLKIAT DGIIVVSMEI LRPQSIDGLN ETGIKGKLRI TTRCLWLDKG 600 KLLDALHKAA HAALSSCPVN CPLAHMERTV SELLKKMVRK YSGKRPEVIV LAVENPGGVL 660 SEQLGRRLSG KSDTRFGMSA LRKAVDGQPT KSHLNGIRPD GNDDLHSEDN SSQESQGYYI 720 EPGSLLPEED YNSSNSNLTE TESSGNEGLE DFWRPFITPS SPVNELVKED EGSVQPSKNT 780 LEISNGGEEG SDEGSLKTSN SSEKPLKPVK SNKWKPEEMK RLIKLRGQLH ARFQVPKGRM 840 ALWEEISRSM LGDGMNRSPG QCKSLWASLV QKYEQDSKSE KTIKKSWPYF EEMDAILSDS 900 EAVASK

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence

MQLEFLGGSS VLRSPHLGPY RHTMAAFGAL SLCPCSPLPR PRTIYCCSGT PKVLGNNVSR  60
VHRKRPGGLE GARKSMEDSV KRKMEQFYEG SDGPPLRVLP IGGLGEIGMN CMLVGNYDRY  120
ILIDAGVMFP DHDELGVQKI IPDTTFIRRW SHKIEAVVIT HGHEDHIGAL PWVIPALDSH  180
TPIYASSFTV ELIKKRLKEN GIFVPSRLKV FKMRKRFTAG PFEIEPIRVT HSIPDCCGLV  240
LRCADGTILH TGDWKIDESP LDGKVFDRET LEELSKEGVT LMMSDSTNVL SPGRTISESV  300
VADALLRRIS AAKGRVITTQ FASNIHRLGS VKAAADLTGR KLVFVGMSLR TYLEAAWKDG  360
KAPIDPSTLV KVEDIEAYAP KDLLIVTTGS QAEPRAALNL ASYGSSHSLK LSKEDMILYS  420
AKVIPGNESR VMKMLNRISE IGSNIIMGKN ELLHTSGHAY RGELEEILQI VKPQHFLPIH  480
GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV LSNGFTSLGK ENLQLKYSDG  540
DKAFGSSSEL FVDERLKIAT DGIIVVSMEI LRPQSIDGLN ETGIKGKLRI TTRCLWLDKG  600
KLLDALHKAA HAALSSCPVN CPLAHMERTV SELLKKMVRK YSGKRPEVIV LAVENPGGVL  660
SEQLGRRLSG KSDTRFGMSA LRKAVDGQPT KSHLNGIRPD GNDDLHSEDN SSQESQGYYI  720
EPGSLLPEED YNSSNSNLTE TESSGNEGLE DFWRPFITPS SPVNELVKED EGSVQPSKNT  780
LEISNGGEEG SDEGSLKTSN SSEKPLKPVK SNKWKPEEMK RLIKLRGQLH ARFQVPKGRM  840
ALWEEISRSM LGDGMNRSPG QCKSLWASLV QKYEQDSKSE KTIKKSWPYF EEMDAILSDS  900
EAVASK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein