PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023531374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 32052.1 Da PI: 9.4798 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.2e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_023531374.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127 8***********************96 PP | |||||||
2 | zf-CCCH | 28.7 | 2.3e-09 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ G C + +rC+FaHg+ XP_023531374.1 269 FKTKLCANFAK-GNCTFRERCHFAHGE 294 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MDPDGVRKRE RAETALNGNG AFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMNSPAIS PGIRNPVAPP SFPDGVSPPA VKTRLCNKFN SAEGCRFGDK 120 CHFAHGEWDL GRPNPPPEHG GMGGGPLAQQ PRMGGGWNVP PPQPNHGPAA SFGASATAKI 180 SVDASLAGPI IGKNGVNSKN ICRMTGARLS IKDHESDSSL KNIELEGTFD QINLASSMVR 240 ELIANVGAAS ANNAMRQQQQ HSQHSANNFK TKLCANFAKG NCTFRERCHF AHGESELRKP 300 GM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 6e-72 | C3H family protein |