PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531320.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 383aa    MW: 42421.5 Da    PI: 7.7446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171.1e-05137157526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f+r G C +Gd C FaHg
  XP_023531320.1 137 MCPEFRR-GGCGRGDGCEFAHG 157
                     6******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MSSVCAENQK YQFHFQFPPS SSDFVVSERI PFLKDINVPP RKLLAARRDQ NAEMCTDSPR  60
FSFAVESLLQ KFLPFNGEDE AEEDGDPYSS DHFRMYEFKV RRCTRSRSHD WTDCPFAHPG  120
EKARRRDPRR FHYSGTMCPE FRRGGCGRGD GCEFAHGVFE CWLHPARYRT EACKDGKNCK  180
RKVCFFAHSP RELRLLPPVS NFQGGGSCSS PNKKSSNLRS AAGSNHCCLF CHCGGAATSS  240
PTSTLFGMSH LSPPHSPPLS PGNPRSMNGF SPISRYSNPD QSKLKGVLSY KDALTELMSS  300
IESMNIDDAN ATLAAAIPAP RPTPWIDVSS LNPEDQLQFI LSPSTPNFSA ASANLSCEHK  360
SNADNGWAST SGPDLGWVND LLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-76C3H family protein