PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531140.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 527aa MW: 59593.7 Da PI: 8.0041

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.4e-06	71	91	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G+C+ Gd+C+F Hg XP_023531140.1 71 PCYFYFN-GFCSKGDTCTFLHG 91 7999999.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MIMRFLDSNG FDCEYRHSEI ARLNPRDCYY WLAGNCLNAA CSFRHPPMDG AAGKVFESSQ 60 SSVPVNKTNI PCYFYFNGFC SKGDTCTFLH GNDIPVAARS TKIGNTSSSE DKTASSHKNG 120 LASTDADAFL HPSKKVVGPT IEGTFRESLS HPSAENVSIR SACAKISLPE CEKVAVDEPV 180 SLPLTEGSKY SRSHVHVVAD QSYEEPMMDS SEDENPLESS TGFDVVVGHE SENLDSDDDS 240 EYLLSTNLEQ RELDTELCRD DDEDYIAYEP MHSDLELLYE REMHSYDHLE RNSVLSNDRN 300 VISCSRGKLI KSLFTRKRKL TLMNIDSEEW NRTDLRSYLQ RDGVSGNGSI IGLSRRRNGM 360 SRRTSRNFAK PWKDGLYHPT LGRRLPLHVG KVSGESLSEN LTFSNSISGY RSFRHSRQYK 420 PCRYYDGYRL ARRQHPLSNI SRRPVSREPV PRDHGFNLKS VPFKGPKTLS QIKDEKRKVE 480 ENRGLSMKKR HSIGCASSSA DFRGPKPLSD ILKDKRKVEK LVKEIIS

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MIMRFLDSNG FDCEYRHSEI ARLNPRDCYY WLAGNCLNAA CSFRHPPMDG AAGKVFESSQ  60
SSVPVNKTNI PCYFYFNGFC SKGDTCTFLH GNDIPVAARS TKIGNTSSSE DKTASSHKNG  120
LASTDADAFL HPSKKVVGPT IEGTFRESLS HPSAENVSIR SACAKISLPE CEKVAVDEPV  180
SLPLTEGSKY SRSHVHVVAD QSYEEPMMDS SEDENPLESS TGFDVVVGHE SENLDSDDDS  240
EYLLSTNLEQ RELDTELCRD DDEDYIAYEP MHSDLELLYE REMHSYDHLE RNSVLSNDRN  300
VISCSRGKLI KSLFTRKRKL TLMNIDSEEW NRTDLRSYLQ RDGVSGNGSI IGLSRRRNGM  360
SRRTSRNFAK PWKDGLYHPT LGRRLPLHVG KVSGESLSEN LTFSNSISGY RSFRHSRQYK  420
PCRYYDGYRL ARRQHPLSNI SRRPVSREPV PRDHGFNLKS VPFKGPKTLS QIKDEKRKVE  480
ENRGLSMKKR HSIGCASSSA DFRGPKPLSD ILKDKRKVEK LVKEIIS