PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531131.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 534aa MW: 58497.2 Da PI: 7.6783

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.9	1e-41	173	249	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrr++q XP_023531131.1 173 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRRPQV 249 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MESWSYVSEG KGCMSDEMNS PTSSLARNKD SALGWDFKNP CNFSSTMLAT GQQVNNQGFG 60 ELVFPEMIGK QLPDICDILS SKVVGGRFLN PAMNSSNAFL GEDESTSKFS GSIVDSSGRD 120 SSFIDLNLGR FADQRDAHGY KIFKGAPIVS SSESSMPSKR VRASGLNSQT YFCQVYGCNK 180 DLSSSKDYHK RHKVCEAHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH 240 NERRRRPQVA LNSSRAGRFL QSYNGSRFQG TPATSFICQE ILPSGIMHPE KYGTSDWCRT 300 VKIEDKNEYM PLSAVHVPSG HLHSKSLFSP YDIDTQIPPF HDNGLNAAAT NMFKENSNQY 360 PISVGGVFNN PSLGSEYFSV FSAATTDRIS GLSDSGCALS LLSSQTQNSS THSSGIPIAR 420 PLVLLEGQNH YSMSQLSEKL MGVSSQVSVS GVSNKFNSSG LNTLGPISTP ETSDAVNFES 480 TNRVFHGSNL ADTTEGSPTI DLLQLSSQLH RVEHERQVMQ VKQESNAFCC LRIT

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MESWSYVSEG KGCMSDEMNS PTSSLARNKD SALGWDFKNP CNFSSTMLAT GQQVNNQGFG  60
ELVFPEMIGK QLPDICDILS SKVVGGRFLN PAMNSSNAFL GEDESTSKFS GSIVDSSGRD  120
SSFIDLNLGR FADQRDAHGY KIFKGAPIVS SSESSMPSKR VRASGLNSQT YFCQVYGCNK  180
DLSSSKDYHK RHKVCEAHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH  240
NERRRRPQVA LNSSRAGRFL QSYNGSRFQG TPATSFICQE ILPSGIMHPE KYGTSDWCRT  300
VKIEDKNEYM PLSAVHVPSG HLHSKSLFSP YDIDTQIPPF HDNGLNAAAT NMFKENSNQY  360
PISVGGVFNN PSLGSEYFSV FSAATTDRIS GLSDSGCALS LLSSQTQNSS THSSGIPIAR  420
PLVLLEGQNH YSMSQLSEKL MGVSSQVSVS GVSNKFNSSG LNTLGPISTP ETSDAVNFES  480
TNRVFHGSNL ADTTEGSPTI DLLQLSSQLH RVEHERQVMQ VKQESNAFCC LRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-47	SBP family protein