PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531072.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 438aa MW: 48178.4 Da PI: 8.9018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F r nL+ H r H XP_023531072.1 59 CDICGKGFQRDQNLQLHRRGH 79 *******************88 PP
2	zf-C2H2	13	0.00032	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_023531072.1 135 WKCEKCSKKYAVQSDWKAHSKTC 157 58*****************9998 PP
3	zf-C2H2	12.2	0.00055	165	183	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + XP_023531072.1 165 DCGTPFSRRDSYVTHRAYC 183 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MSEEQTISNA FICSLPTLGS NNNPPVLKKK RNLPGNPDPK AEVVALSPKT LMATNRFLCD 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSN SNKEPRKRVY VCPEKSCVHH HPSRALGDLT 120 GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTK EYKCDCGTPF SRRDSYVTHR 180 AYCMALAEET ARLNAAASTM NTADNGYHFL RPNTNPHQYF PSSTFFRQDH ENSQMFLNNN 240 VNSLTPTIAF PFWMPNSSPQ DNNFHHPLAP PPLPPPPPPP PPTATTSCLL SVPSLYSHEE 300 QANQAMASSS AAANMSATVL LQKAAEMAVT SSTTTDPSSL MASFGLKFSA TTDGKALFSG 360 LYGSMNSNSI PSCCSLENGG DHQDSAASNL IQMYPAAKRI RHTVSEESVT GGEGETRDFL 420 GVGIPTICHH PSAVNGWM

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MSEEQTISNA FICSLPTLGS NNNPPVLKKK RNLPGNPDPK AEVVALSPKT LMATNRFLCD  60
ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSN SNKEPRKRVY VCPEKSCVHH HPSRALGDLT  120
GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTK EYKCDCGTPF SRRDSYVTHR  180
AYCMALAEET ARLNAAASTM NTADNGYHFL RPNTNPHQYF PSSTFFRQDH ENSQMFLNNN  240
VNSLTPTIAF PFWMPNSSPQ DNNFHHPLAP PPLPPPPPPP PPTATTSCLL SVPSLYSHEE  300
QANQAMASSS AAANMSATVL LQKAAEMAVT SSTTTDPSSL MASFGLKFSA TTDGKALFSG  360
LYGSMNSNSI PSCCSLENGG DHQDSAASNL IQMYPAAKRI RHTVSEESVT GGEGETRDFL  420
GVGIPTICHH PSAVNGWM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-116	C2H2 family protein