PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531056.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 276aa MW: 31175.5 Da PI: 6.5128

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed llv+ + +G g+W++ a + g++Rt+k+c++rw++yl XP_023531056.1 30 RGPWTVDEDSLLVHSISVHGEGRWNLLAIRSGLRRTGKSCRLRWLNYL 77 89********************************************97 PP
2	Myb_DNA-binding	51.4	2.5e-16	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ XP_023531056.1 83 RGNLSPQEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 126 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MASPCKSQSQ SQSSSCSSSV VEDNQNGLRR GPWTVDEDSL LVHSISVHGE GRWNLLAIRS 60 GLRRTGKSCR LRWLNYLKPD VIRGNLSPQE QLLILDLHSR WGNRWSKIAQ HLPGRTDNEI 120 KNYWRTRVQK QAKLLNIDTN SSEFKEIINR FWIPRLVQQI NESSNSPSSS FSSPPPPNMP 180 PARPASQLSD TDTLPAADGK RRHFDTEQNS TSSESMDISQ VSDPFSDVPS WNHGSEMTAV 240 DFQYPIGDSR SPLTGWVDDD DSFGGCLWNF DGLWQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	7e-71	MYB family protein