PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530764.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 189aa    MW: 21092.7 Da    PI: 6.4974
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.46.8e-4510107198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG++g i+ lq+q+++l++el+
  XP_023530764.1  10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELD 104
                     7********************************************************************************************99 PP

          DUF260  96 llk 98 
                     +++
  XP_023530764.1 105 AAN 107
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MASSSCYNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP  60
HQREDAVNSL AYEAEARVRD PVYGCIGAIS FLQRQIHRLQ KELDAANVDL IRYACNEIPD  120
GGASHVVQPI PDLRPRALDQ YHTRILGNEG SSSGYYNQHP PAFPMGYPLP WNENSSGNNI  180
NEGGRDDNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.27e-75LBD family protein