PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530763.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 296aa MW: 33112.7 Da PI: 7.457

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142	1.9e-44	117	214	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG++g i+ lq+q+++l++el+ XP_023530763.1 117 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELD 211 7********************************************************************************************99 PP DUF260 96 llk 98 +++ XP_023530763.1 212 AAN 214 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MQGHSHSLVS VPTIYYYPCL LPPFSSPCCF FPSTKYTLSH LSSTQCNPKF LYLSLSFFIF 60 FLHLGFCFSS ITALQSSVTH NFGLSKGKEE GFYISISLSL SLSLERKMAS SSCYNSPCAA 120 CKFLRRKCMP DCIFAPYFPP EEPQKFANVH KIFGASNVTK LLNELLPHQR EDAVNSLAYE 180 AEARVRDPVY GCIGAISFLQ RQIHRLQKEL DAANVDLIRY ACNEIPDGGA SHVVQPIPDL 240 RPRALDQYHT RILGNEGSSS GYYNQHPPAF PMGYPLPWNE NSSGNNINEG GRDDNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	5e-74	LBD family protein