PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530757.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 343aa MW: 38570.9 Da PI: 7.3697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl XP_023530757.1 14 KGLWSPEEDEKLFNYIATFGVGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.4	8.9e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023530757.1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRNSCCLKS KLRKGLWSPE EDEKLFNYIA TFGVGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPATHKPLE ENMEGMQDQK PRMGAAPHHL HGNISNLTIS SNDSNHHYKQ IEDSSHHFVN 180 KIEFDSLSSY FGAPIQHQSS IRSCDQNFLY SSSSFGMPSY SSSEHGNTSR TDFSENSASG 240 LSSFFMNEVK ESSSNSSVVS NYSGFHGKLN NGGYSWEAEN KLESLFQFQT NEVKNMELMK 300 GSSSREETKM IQTQNNSSNF GSYPLMSMSE NAGGGSFGVF HQI

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRNSCCLKS KLRKGLWSPE EDEKLFNYIA TFGVGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPLE ENMEGMQDQK PRMGAAPHHL HGNISNLTIS SNDSNHHYKQ IEDSSHHFVN  180
KIEFDSLSSY FGAPIQHQSS IRSCDQNFLY SSSSFGMPSY SSSEHGNTSR TDFSENSASG  240
LSSFFMNEVK ESSSNSSVVS NYSGFHGKLN NGGYSWEAEN KLESLFQFQT NEVKNMELMK  300
GSSSREETKM IQTQNNSSNF GSYPLMSMSE NAGGGSFGVF HQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	4e-79	MYB family protein