PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530588.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 471aa    MW: 52907.8 Da    PI: 6.45
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.24.9e-140464681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+ g+l +a+ +L ++s+las dgd+mqR+aayf+eALa r+++++++lyka+++++ +   +see+ + klf+ev+P+lk++ 
  XP_023530588.1  46 LIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIP--VVSEEILVKKLFFEVFPFLKVAI 138
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+++HiiD+++++ +QW+aLlq L+ Rpegpp+lRiTgv++    +k+ l ++++rL++ Ae++++pf+f+  v+ rledl+
  XP_023530588.1 139 VLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHQ----QKQVLDRMARRLTEEAEKFDIPFRFDS-VVCRLEDLD 228
                     ******************************************************....9**************************.6899***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdevLk 229
                     +e+Lrvk+gEala+++vlqlh+ll                                                        + s++   ++d++L+
  XP_023530588.1 229 MEKLRVKTGEALAISSVLQLHTLLaadnevlqkssplagksangvhysryqhpnqtalsellekdsvngcspspdsvsssALSQANVTKIDSFLN 323
                     ****************************************************************************996633333333799**** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      ++sl Pkv+vv+eq+++hn+++++er leal++y+a+fd+le++++r+s er k+E++l+g+ei+n++aceg er+erhe+ ekW++r++ aGF
  XP_023530588.1 324 GLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGGERKERHEKREKWSQRFDLAGF 418
                     *********************************************************************************************** PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + vpls++ + qa++ll+ ++ dgy+++ee+g+++++W+dr+L+svSaWr
  XP_023530588.1 419 RHVPLSYYGMLQARSLLQGYGCDGYKLKEENGCVMICWQDRSLFSVSAWR 468
                     *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MFQDEGTSSI TSSPLQFFTM MSLSPKLGSP YPWLRELKSE ERGLYLIHLL LTCANHVAVG  60
SLDNANLALD QISHLASADG DTMQRIAAYF AEALADRILK TWPGLYKAFN STKIPVVSEE  120
ILVKKLFFEV FPFLKVAIVL TNQAIVEAME GEKMIHIIDL NANETAQWLA LLQVLSVRPE  180
GPPHLRITGV HQQKQVLDRM ARRLTEEAEK FDIPFRFDSV VCRLEDLDME KLRVKTGEAL  240
AISSVLQLHT LLAADNEVLQ KSSPLAGKSA NGVHYSRYQH PNQTALSELL EKDSVNGCSP  300
SPDSVSSSAL SQANVTKIDS FLNGLWSLTP KVMVVTEQDS NHNGATLMER SLEALHTYAA  360
IFDCLESNMS RTSLERLKLE KMLFGEEIKN IIACEGGERK ERHEKREKWS QRFDLAGFRH  420
VPLSYYGMLQ ARSLLQGYGC DGYKLKEENG CVMICWQDRS LFSVSAWRCC K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein