PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530321.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 679aa    MW: 75292.5 Da    PI: 6.4234
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_023530321.1 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_023530321.1 219 NGELRVGVRR 228
                     999*****97 PP
2Auxin_resp102.17.2e-34254336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+s+s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d  +  W nS WrsLk
  XP_023530321.1 254 ASHAVATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLK 336
                     789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    
MSFSAASNLP SGGPHSGSSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM  60
NQGLEQQMPS FNLASKILCK VVNVVLRAEP DTDEVYAQIT LLPESNQSEV TTPDPALPEP  120
TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNQWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAVAT GTLFSVFYKP RTSRSTFLVS LNKYLEAQNH KLSVGMRFKM  300
RFEGEEVPER SFSGTIVGLG DNASPGWANS DWRSLKVQWD EPSSILRPDR VSAWELEPLV  360
ASNPLSSQPT QRNKRPRPTV LPSPTADAAV LGGWKPTVES SAFSFTEPPQ RGRDVYSSPK  420
FSTAASNSLG FNGNSSLGAV SSNNYWSNTN RVENIIDTSS HGANREPIEK KQNTKNGCRL  480
FGIQLLGNSD VGEASPDTTP KMVSVDRLVP PVDTEFDQNS ERSNVHRLDI PSVSCDADKS  540
CLISPLESQS RQIRSCTKVH MQGIAVGRAV DLTRFNQYDD LLRKLEEMFD IEGELCGSVK  600
KWQVVYTDDE DDMMMVGDDP WNEFVSMVRK IFIYTTEEVK RLSPKIKLPL GGETKLSKPD  660
SDTTANHTED QSSIVGSDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0ARF family protein