PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530267.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 326aa MW: 35698.9 Da PI: 9.3725

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.3e-06	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023530267.1 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	16.9	1.8e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+Lk H++t+ XP_023530267.1 84 WKCEKCSKKYAVHSDLKAHLKTC 106 58*******************98 PP
3	zf-C2H2	12	0.00064	114	132	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + XP_023530267.1 114 DCGTVFSRRDSFITHRAYC 132 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSG SDTRRRRVYV CPETSCVHHN 60 PARALGDLTG IKKHFSRKHG EKNWKCEKCS KKYAVHSDLK AHLKTCGSKE YKCDCGTVFS 120 RRDSFITHRA YCDALTEESN KLASRGATMA ASPPITLPHH DLMPIPPKPF NLSAGSMFSS 180 SISNDHHFPS SSSAALMSAT ALLQKAAQMG AAVSSPIIQQ KNGFVTTMAP SSFGGMLPTT 240 CLQKCPQENI GGGVDMEMID DILMLNGMFD KPIGEGARKT MTLDLLGAEG GKGRKFQAEE 300 SVGFGGVMEN VGYFCHQGAM GKQGHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	6e-86	C2H2 family protein