PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530203.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 432aa    MW: 49075.2 Da    PI: 8.9565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06831126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G C++ ++C+FaHg
  XP_023530203.1  8 FKTKLCVLYQK-GRCSR-PSCSFAHG 31
                    69*********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MVVGSKLFKT KLCVLYQKGR CSRPSCSFAH GTAELRRFAG AHDGRREYRG NDLRHKLDSR  60
HSPLQERDSR GRHGPRDYSS SWSLERQSDR KRRKKEYGDS RNDYSGNLRI SDRSEERDRE  120
GKISSASRDT LEGQLNKMQA DIEMAEHHKH QAEVYLDERI QEVDSLTSRI QELESQLYKE  180
REDSRRIKSK IKKFVKAHNR YSRIQDELKR SQVRLEQLGD QLGSDVNKIG ANEEDSSINI  240
VSDGEDPGFH AVSPLHDLQK DNSASKKKHI VQDIAENSKR ADLNKGSKEA VGRLRRFSRW  300
NAHPSQSVYS KIEAVGNEVN ALIPTANDSK QKRGRTSTAV SSADKVRGLE SGVVPLTSMA  360
AHAVDEEVDI ELDVNNKVNE TRENTKEASF GSLPFPPPPP PIREINHSRY ESEDQNVDVV  420
ALDDERARLD NA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RKRRKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.17e-53C3H family protein