PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529647.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 606aa MW: 68504.3 Da PI: 4.7238

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529647.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	351	394	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_023529647.1 351 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 394 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MQTLMERLRP LVGSKSWDYC VLWKLSQDQR CIEWVDCCCA GTENNQNGGE EHVFPCRDTL 60 SPHPRASSCD LLAQLPCSVP LNSGVYIQTL LSNEPRWLLF SNGTDSTALE ETMGTRVLIP 120 FPFGLVELFV AKHASEDQHV IDFVTTQCSI SIEQGAIINS SNMDTSFSVD VNATNEIQSK 180 PFVADQNVVI EDPENQFEAP GSTAPTLENA NVGYEISLDR IRLCSSPMNF LQQFNYSSEN 240 RNKNEIFHEC SQDAFHTDKQ GNPYKFSAEN EFQEVDIMQG SLMNNTSNIH MQFKENTECK 300 EQQGEEKDLV KNENGRSDSV SDCSDQIDDE DDAVAKYRRR TGQGPQSKNL VAERKRRKKL 360 NERLYNLRAL VPKISKMDKA SILGDAIDFV KELQKQVKEL QDELEEHSDD ENGKIVVTGN 420 DGNKTSVQLP EFLSQNDKAQ NSYHIGVLGS GSLLKQNHQD TEGTNNDKTQ QMEPQVEVAQ 480 IDGNEFFVKV FCENKRGGFM RLMEALNALG LEVTNANVTS YRGLVSNVFK VGKKDSELVQ 540 ADDVRDSLLE ITKYPCRGWS EMVKQPECSV SRMDYQTHPH THQHQHQIQH PFLDKAINSR 600 LHLLDD

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MQTLMERLRP LVGSKSWDYC VLWKLSQDQR CIEWVDCCCA GTENNQNGGE EHVFPCRDTL  60
SPHPRASSCD LLAQLPCSVP LNSGVYIQTL LSNEPRWLLF SNGTDSTALE ETMGTRVLIP  120
FPFGLVELFV AKHASEDQHV IDFVTTQCSI SIEQGAIINS SNMDTSFSVD VNATNEIQSK  180
PFVADQNVVI EDPENQFEAP GSTAPTLENA NVGYEISLDR IRLCSSPMNF LQQFNYSSEN  240
RNKNEIFHEC SQDAFHTDKQ GNPYKFSAEN EFQEVDIMQG SLMNNTSNIH MQFKENTECK  300
EQQGEEKDLV KNENGRSDSV SDCSDQIDDE DDAVAKYRRR TGQGPQSKNL VAERKRRKKL  360
NERLYNLRAL VPKISKMDKA SILGDAIDFV KELQKQVKEL QDELEEHSDD ENGKIVVTGN  420
DGNKTSVQLP EFLSQNDKAQ NSYHIGVLGS GSLLKQNHQD TEGTNNDKTQ QMEPQVEVAQ  480
IDGNEFFVKV FCENKRGGFM RLMEALNALG LEVTNANVTS YRGLVSNVFK VGKKDSELVQ  540
ADDVRDSLLE ITKYPCRGWS EMVKQPECSV SRMDYQTHPH THQHQHQIQH PFLDKAINSR  600
LHLLDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	359	RRRTGQGPQSKNLVAERKRRKK
2	353	360	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-129	bHLH family protein