PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529413.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 368aa MW: 40806.3 Da PI: 7.9454

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.7	6.2e-42	89	165	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+ ++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_023529413.1 89 CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGIKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 165 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDWNLKAPYW DFTQLEHDAS KNISTIGASS NFVEHRTTTS RDFSVDLKLG QVSHLGTKYV 60 ANKLKMAPSP SEPSKRARGC GTGAQPLSCL VDGCVSDLSN YRDYHRRHKV CELHSKTPQV 120 TIGGIKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPESLSH YQGSPFIPFS 180 NSYVYPSSTT VANHSWCGIS NTKADASLHT QQHSTHFPDK HHMYLGSSSN DSIHKIPKQV 240 TFLQSDNPES LVCQPLDFSE NVGGRGKLLF DRFSNPGHES DCALSLLSSL QTRSSGVGLS 300 QPDQDSNLIS FMQPLDVSLG HHNSLDPLNS VLNGSVSNAD ISCSGMFQSA SDDGGREAPP 360 PSLPFQWQ

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDWNLKAPYW DFTQLEHDAS KNISTIGASS NFVEHRTTTS RDFSVDLKLG QVSHLGTKYV  60
ANKLKMAPSP SEPSKRARGC GTGAQPLSCL VDGCVSDLSN YRDYHRRHKV CELHSKTPQV  120
TIGGIKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPESLSH YQGSPFIPFS  180
NSYVYPSSTT VANHSWCGIS NTKADASLHT QQHSTHFPDK HHMYLGSSSN DSIHKIPKQV  240
TFLQSDNPES LVCQPLDFSE NVGGRGKLLF DRFSNPGHES DCALSLLSSL QTRSSGVGLS  300
QPDQDSNLIS FMQPLDVSLG HHNSLDPLNS VLNGSVSNAD ISCSGMFQSA SDDGGREAPP  360
PSLPFQWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	163	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-55	SBP family protein