PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023529223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | CO-like | ||||||||
Protein Properties | Length: 371aa MW: 40697.8 Da PI: 6.3671 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.1 | 1.5e-07 | 22 | 61 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 C+ ++ + +C+ ++ +lC +C +++H g H+ XP_023529223.1 22 PCDSCKTAAAAVYCRPDSAFLCLNCDTKIH-GanklasrHD 61 7******99*********************.5466777776 PP | |||||||
2 | zf-B_box | 27.7 | 5.8e-09 | 62 | 108 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_023529223.1 62 RVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSAnplarrHERVPV 108 5789*****************************66899999999986 PP | |||||||
3 | CCT | 70.4 | 4.4e-24 | 298 | 341 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_023529223.1 298 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRS 341 9*****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence |
MGIEGASVVK GFRGGWGVVS KPCDSCKTAA AAVYCRPDSA FLCLNCDTKI HGANKLASRH 60 DRVWMCEVCE QAPAAVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDSAESLVK 120 PSSVFNFLMP TESNVSGCDG AHHHEEVEVA SWLMSNPPFN SKHVDGPEIK PSADHMFFTE 180 MDSFIDFDYP NPVSAINDSV VPVQTKPLST PVINHTHSPE NCYDIDFCRS KLNSFGYQPQ 240 SLSHSVSSSS LEVGVVPEGN SMSDISYPLG QTLSNGTDSG LPMSVPGNQA TQLCGIDREA 300 RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR SDALSEVDEM YGSAASSEFL 360 TEFQYGVVPT F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-108 | CO-like family protein |