PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023529223.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family CO-like
Protein Properties Length: 371aa    MW: 40697.8 Da    PI: 6.3671
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023529223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-072261538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                     C+ ++   +  +C+ ++ +lC +C +++H g       H+
  XP_023529223.1 22 PCDSCKTAAAAVYCRPDSAFLCLNCDTKIH-GanklasrHD 61
                    7******99*********************.5466777776 PP

2zf-B_box27.75.8e-0962108242
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     + ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  XP_023529223.1  62 RVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSAnplarrHERVPV 108
                     5789*****************************66899999999986 PP

3CCT70.44.4e-24298341144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_023529223.1 298 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRS 341
                     9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MGIEGASVVK GFRGGWGVVS KPCDSCKTAA AAVYCRPDSA FLCLNCDTKI HGANKLASRH  60
DRVWMCEVCE QAPAAVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDSAESLVK  120
PSSVFNFLMP TESNVSGCDG AHHHEEVEVA SWLMSNPPFN SKHVDGPEIK PSADHMFFTE  180
MDSFIDFDYP NPVSAINDSV VPVQTKPLST PVINHTHSPE NCYDIDFCRS KLNSFGYQPQ  240
SLSHSVSSSS LEVGVVPEGN SMSDISYPLG QTLSNGTDSG LPMSVPGNQA TQLCGIDREA  300
RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR SDALSEVDEM YGSAASSEFL  360
TEFQYGVVPT F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-108CO-like family protein