PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529192.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 472aa MW: 51936 Da PI: 10.2607

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.9	8.3e-24	145	189	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep+rCrRtDGKkWRCsr++++ +k+CErH+hrgr+rsrk++e+ XP_023529192.1 145 EPEPWRCRRTDGKKWRCSRKTVPHQKYCERHMHRGRQRSRKPVEA 189 69****************************************997 PP
2	WRC	56.6	4.4e-18	364	402	3	41
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 epgrCrRtDGKkWRC+r+ ++++k+C H+hrg+++ k XP_023529192.1 364 EPGRCRRTDGKKWRCRRDIIPNQKYCSLHMHRGSKKHLK 402 9********************************877655 PP
3	QLQ	41.9	3.1e-15	88	118	7	37
QLQ 7 QlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 Qlq+L++Q+l+ KyLaa++ vP +Ll++i+k XP_023529192.1 88 QLQELEQQVLIHKYLAAGLRVPTHLLVPIWK 118 *****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MEVHPLQSFP SSETGRGLRR RKTDEAATAA MMMKVKKESN QTENDELSAP VSPSINLGLQ 60 IGTNSAGSRN ERTSIVHRSR ESLITVGQLQ ELEQQVLIHK YLAAGLRVPT HLLVPIWKSV 120 ARTLGSNVNV IGFNPVGFDY GSMMEPEPWR CRRTDGKKWR CSRKTVPHQK YCERHMHRGR 180 QRSRKPVEAS ENDSSSKKIL LNNPDRDIRC TLDVTTAIPF PHVGAVVPEP KTVSIARSKS 240 ATETITSSMR GASAIGMSCA DATKTIRMIP SSALNTTATC ITTVPNINPT ATTSIPTSYI 300 VNLKDACNMN FRENCSKSRN DFGRNDINIQ KITSPGLGFS PNSVLQVSGC SSSLCDSKIN 360 LECEPGRCRR TDGKKWRCRR DIIPNQKYCS LHMHRGSKKH LKPSQNAPVL APSAATYGSS 420 LLPTPLKKLE PATPNTNLSM SIQADDKQRH NEARNNASSS SETTITDTTI TA

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MEVHPLQSFP SSETGRGLRR RKTDEAATAA MMMKVKKESN QTENDELSAP VSPSINLGLQ  60
IGTNSAGSRN ERTSIVHRSR ESLITVGQLQ ELEQQVLIHK YLAAGLRVPT HLLVPIWKSV  120
ARTLGSNVNV IGFNPVGFDY GSMMEPEPWR CRRTDGKKWR CSRKTVPHQK YCERHMHRGR  180
QRSRKPVEAS ENDSSSKKIL LNNPDRDIRC TLDVTTAIPF PHVGAVVPEP KTVSIARSKS  240
ATETITSSMR GASAIGMSCA DATKTIRMIP SSALNTTATC ITTVPNINPT ATTSIPTSYI  300
VNLKDACNMN FRENCSKSRN DFGRNDINIQ KITSPGLGFS PNSVLQVSGC SSSLCDSKIN  360
LECEPGRCRR TDGKKWRCRR DIIPNQKYCS LHMHRGSKKH LKPSQNAPVL APSAATYGSS  420
LLPTPLKKLE PATPNTNLSM SIQADDKQRH NEARNNASSS SETTITDTTI TA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	6e-46	GRF family protein