PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528889.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 292aa    MW: 32464.7 Da    PI: 8.2425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.7e-113583147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g      +  q++s+ qky
   XP_023528889.1 35 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVGsktVIQSMLQIRSHAQKY 83
                     789*****************77.*********77744578899***9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MNSNASNPHT SMATSSAADS SGKKVRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI  60
EDFVGSKTVI QSMLQIRSHA QKYFLKVQKN GTIAHVPPPR PKRKASHPYP QKASKNVLVP  120
MQASMAYPSS VNTLALGYCP WEDASIMINP SSNKVTHPQD EFTNLHRSET ENASEGTPMI  180
NSNSLNVIGS PDTGKQGKQA PMLHGLPDFA EVYGFIGSVF DPESKEHVNK LKEMDPINFE  240
TVLLLMRNLT FNLSSPDFEP LRTVLSTYDV NTKTVAVAAG VPTKKHTDDI SC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-118MYB_related family protein