PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528885.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 490aa MW: 54135.2 Da PI: 6.7019

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	149	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023528885.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*****************......55**********************997 PP
2	AP2	43	1.2e-13	275	325	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_023528885.1 275 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 325 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MLDLNLQVVS SDSVEMVTER LFQFPAIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA 60 FGKDCAVQEN LTAKSLCISD NHRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA 120 PERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQVGLA KLILITVRTS NSFSNAIDEE 240 LYSWLPLMSQ MSNFTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY 300 IYLGLFDSEI EAARAYDKAA LKCNGKEAVT NFEPSSYVAE MASEAAGTAE NNQILDLNLG 360 IAPPNLCEAQ SESIAMFERR AMPENSVSAA IRSSHSQPYS FAVPSNYHSP WSVSNSSFFP 420 NSRERATEMR MGVGSWEWQI HGHPSGTTSV PLFSAAASSG FPSSSSSTAI PSASSGVGET 480 HFPAIFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MLDLNLQVVS SDSVEMVTER LFQFPAIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA  60
FGKDCAVQEN LTAKSLCISD NHRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA  120
PERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQVGLA KLILITVRTS NSFSNAIDEE  240
LYSWLPLMSQ MSNFTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  300
IYLGLFDSEI EAARAYDKAA LKCNGKEAVT NFEPSSYVAE MASEAAGTAE NNQILDLNLG  360
IAPPNLCEAQ SESIAMFERR AMPENSVSAA IRSSHSQPYS FAVPSNYHSP WSVSNSSFFP  420
NSRERATEMR MGVGSWEWQI HGHPSGTTSV PLFSAAASSG FPSSSSSTAI PSASSGVGET  480
HFPAIFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-91	AP2 family protein