PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528698.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 307aa    MW: 33129.9 Da    PI: 9.0609
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601002.3e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  XP_023528698.1   4 SCNGCRVLRKGCSENCSIRPCLhwiksPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_023528698.1  99 AVEAVLKGA 107
                     ***998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MRMSCNGCRV LRKGCSENCS IRPCLHWIKS PDSQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSEAAATG  120
DGPPLKAYDI RHVSKDENSA ASIDGGVNRR VKTRCRFKRS AVKTKACKGI SSTVDESTRR  180
LCSIELNRSS SGESSLSHQS DSPHVENESK ETDSMISVST AEFSPPPVLP VLFRSESTSV  240
QKRPGHGGGT VPIPQSELAL ELTLGMKPVS RAEHVIPMKK RKIETDVGLR PNNNEACNTV  300
LGLDFAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-101LBD family protein