PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528656.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 711aa    MW: 79314.4 Da    PI: 6.9361
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.4e-192883156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ ++++++q+++Le++F+ +++p++++r++L+++lgL+++q+k+WFqN+R++ k
  XP_023528656.1 28 KKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTK 83
                    688999***********************************************988 PP
2START142.63.8e-452274473206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a++el+++   +ep+W+k        + +d + ++f++ +       ++e ++asgvv+m +++lv  +ld   +W   ++     aet   
  XP_023528656.1 227 AATALEELIRLLRIDEPLWMKILndgrCVLHRDSYEKIFPRPNHfkssnARTESSKASGVVTMSAMQLVDAFLDAD-KWADLFPtviiNAETFHI 320
                     67899******************877766777777777776555899999**************************.99999999999******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     i++g      galqlm++++   splv+ Rdf f+R+++q + g+wvivdvS +  ++  +   ++R+ +lpSg++i++++ng skvtwvehv++
  XP_023528656.1 321 IDPGmpgnrsGALQLMYQQMHIFSPLVSpRDFCFLRHCQQIEHGVWVIVDVSYEFLKDCVT---SARCWRLPSGCMIQEMPNGCSKVTWVEHVEV 412
                     *************************9999**************************999885...9****************************** PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++++  h l+r lv +++a ga +wv tlqr ce+
  XP_023528656.1 413 DDKTQtHRLYRDLVFNTTAYGAERWVFTLQRMCER 447
                     **9998***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MDFMMEGRGS YGGGSGDEQE ASNDRKGKKT YHRHNPYQIQ QLESFFRACP HPDENQRRQL  60
SRELGLETKQ IKFWFQNKRT QTKTQNERAD NSSLRTENEK IQCENLAIRE ALRNVICPSC  120
GGPPFGEEER QRNLHKLRLE NAHLKEEHEK VSNLLAKYIG KPISQLESLL PVLGSSLDLS  180
PRSSLTQIVP SPAVNLMSDP VILDRTATPY QSRGINDLEN ALMMETAATA LEELIRLLRI  240
DEPLWMKILN DGRCVLHRDS YEKIFPRPNH FKSSNARTES SKASGVVTMS AMQLVDAFLD  300
ADKWADLFPT VIINAETFHI IDPGMPGNRS GALQLMYQQM HIFSPLVSPR DFCFLRHCQQ  360
IEHGVWVIVD VSYEFLKDCV TSARCWRLPS GCMIQEMPNG CSKVTWVEHV EVDDKTQTHR  420
LYRDLVFNTT AYGAERWVFT LQRMCERLAY TFRDCAPSHE LGGVLTSNEG RRSIMKLSHR  480
MVKNFCGVLS MSGKLDFPQL SEVNNSGVRI SVRISSELGQ PSGTIVSAAT SLWLPLQPES  540
IFNFFKDEKA RVQWDVLSNG SPVHEIAHIL TGVHPGNSIL IIRQPFVPTE NNMLILQESC  600
IDPLGSLVIY APIDMPAMNI ATSGQDPSEI PILPSGFVIT GDGRSHSGVG ASTSATSGRP  660
SGSLLTVAFQ ILVSSVSSSK QLNVESVATV NTLISATVQR IKAALNCSGL D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein