PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528614.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 724aa    MW: 82899.1 Da    PI: 5.0573
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.52e-1163497201374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a++++d+++a++lL++++++asp gd +qRla++f+ +L+arla+++s++yk l  ++ts    ++el+a++l+  ++P+ k+s+
  XP_023528614.1 349 LRTLLISCAQAIAADDHRNASELLKKIRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLVNKRTS---AADELKAYHLYLAACPFRKISN 440
                     6789************************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +t N++I+ a+e+++++H+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+
  XP_023528614.1 441 FTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWREGGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAESFNVPFEYNA-IAKKWEN 534
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E l+Vn+ ++ ++l desv++es+r++v +l+ +++P++++    +  +n++ F++rf eal ++sa+fd+le+ +pre+ er+
  XP_023528614.1 535 ISVEELNIHQDEFLVVNCLYRAKNLSDESVATESARSSVFRLIHKIKPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERM 629
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Ere++gre+ nv+aceg er+er et+++W+ ++++aGF ++p+  ++ + a   +r  + + + ++e+s ++++gWk+r ++++SaW+
  XP_023528614.1 630 LLEREIFGREALNVIACEGWERVERPETYKQWQFWIMRAGFVQLPFYPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISAWK 720
                     **************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MFQDTVLSHN FEEFNCFPLD PSPNNMASSS SIRTSSSNEA SHEEDYLEDY DFSDAVLRFI  60
NQILMEEDME DKTCMLQDSL DLQAAEKSFY EVLGKKYPPS PEPNRSLANQ YSDSFYEELC  120
GDSINCLNSY RNTFYYGDDN PFQTLGEDVF QIRSTLDDII SPSSHSSSNS IISGADGWVD  180
FSNNTILVPE PNDRSQSIWQ FQKGFEEASK FLPGENNLCL DFEVNEPATH GPEEETSEIY  240
LKAGRTDQKS VLSLESRGRK NPHDEDGDLE EERCRKQAAL FTESTLRSKM FDIVLLCSAG  300
EGRERLVSFR QELQNAKIKS MLQNGQLKEF RGGRGRRKKH SGKKEVVDLR TLLISCAQAI  360
AADDHRNASE LLKKIRQHAS PFGDGNQRLA SCFADGLEAR LAGTGSQIYK GLVNKRTSAA  420
DELKAYHLYL AACPFRKISN FTSNRTIMIA AENATKLHVI DFGILYGFQW PTLIQRLSWR  480
EGGPPKLRIT GIEFPQPGFR PAERVEETGR RLAAYAESFN VPFEYNAIAK KWENISVEEL  540
NIHQDEFLVV NCLYRAKNLS DESVATESAR SSVFRLIHKI KPNLFISGVV NGAYNAPFFV  600
TRFREALFHF SAIFDMLETV VPREDWERML LEREIFGREA LNVIACEGWE RVERPETYKQ  660
WQFWIMRAGF VQLPFYPEIF ERAVEKVRSS YHRDFLIDED SRWILQGWKG RIIYAISAWK  720
PAAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein