PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528613.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 758aa    MW: 86697.4 Da    PI: 5.119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528613.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.32.3e-1163837541374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a++++d+++a++lL++++++asp gd +qRla++f+ +L+arla+++s++yk l  ++ts    ++el+a++l+  ++P+ k+s+
  XP_023528613.1 383 LRTLLISCAQAIAADDHRNASELLKKIRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLVNKRTS---AADELKAYHLYLAACPFRKISN 474
                     6789************************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +t N++I+ a+e+++++H+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+
  XP_023528613.1 475 FTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWREGGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAESFNVPFEYNA-IAKKWEN 568
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E l+Vn+ ++ ++l desv++es+r++v +l+ +++P++++    +  +n++ F++rf eal ++sa+fd+le+ +pre+ er+
  XP_023528613.1 569 ISVEELNIHQDEFLVVNCLYRAKNLSDESVATESARSSVFRLIHKIKPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERM 663
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Ere++gre+ nv+aceg er+er et+++W+ ++++aGF ++p+  ++ + a   +r  + + + ++e+s ++++gWk+r ++++SaW+
  XP_023528613.1 664 LLEREIFGREALNVIACEGWERVERPETYKQWQFWIMRAGFVQLPFYPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISAWK 754
                     **************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    
MDPRFTRQAG FTNEILIGNR PFAVQAQENA LGRPMFQDTV LSHNFEEFNC FPLDPSPNNM  60
ASSSSIRTSS SNEASHEEDY LEDYDFSDAV LRFINQILME EDMEDKTCML QDSLDLQAAE  120
KSFYEVLGKK YPPSPEPNRS LANQYSDSFY EELCGDSINC LNSYRNTFYY GDDNPFQTLG  180
EDVFQIRSTL DDIISPSSHS SSNSIISGAD GWVDFSNNTI LVPEPNDRSQ SIWQFQKGFE  240
EASKFLPGEN NLCLDFEVNE PATHGPEEET SEIYLKAGRT DQKSVLSLES RGRKNPHDED  300
GDLEEERCRK QAALFTESTL RSKMFDIVLL CSAGEGRERL VSFRQELQNA KIKSMLQNGQ  360
LKEFRGGRGR RKKHSGKKEV VDLRTLLISC AQAIAADDHR NASELLKKIR QHASPFGDGN  420
QRLASCFADG LEARLAGTGS QIYKGLVNKR TSAADELKAY HLYLAACPFR KISNFTSNRT  480
IMIAAENATK LHVIDFGILY GFQWPTLIQR LSWREGGPPK LRITGIEFPQ PGFRPAERVE  540
ETGRRLAAYA ESFNVPFEYN AIAKKWENIS VEELNIHQDE FLVVNCLYRA KNLSDESVAT  600
ESARSSVFRL IHKIKPNLFI SGVVNGAYNA PFFVTRFREA LFHFSAIFDM LETVVPREDW  660
ERMLLEREIF GREALNVIAC EGWERVERPE TYKQWQFWIM RAGFVQLPFY PEIFERAVEK  720
VRSSYHRDFL IDEDSRWILQ GWKGRIIYAI SAWKPAAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein