PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528567.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 844aa    MW: 93682.5 Da    PI: 6.7114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98.2e-23136237199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + +++ +++l+ +d+ g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_023528567.1 136 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-QQPPTQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 227
                     99*****************************63.4445569************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_023528567.1 228 RELRVGVRRA 237
                     999****996 PP
2Auxin_resp118.36.2e-39262344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s+seFvv+++++++++k+++++G+Rfkm+fe+e+++e+r++Gtv+g +d+dp rW++SkWr+Lk
  XP_023528567.1 262 AWHAISTGTMFTVYYKPRTSPSEFVVPYDQYMESIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLK 344
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MTSAEASIKP NSASAFKNHA DSTKAPSDPP NALSAKDADI ALYTELWNAC AGPLVSVPRE  60
NERVFYFPQG HIEQVEASTN QVPDQQMPVY DLPSKILCRI INVCLKAEAD TDEQDEDSVD  120
KEPPPPPPRR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSQQ PPTQELVAKD  180
LLGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENREL RVGVRRAMRQ  240
HGNVPSSVIS SHSMHLGVLA TAWHAISTGT MFTVYYKPRT SPSEFVVPYD QYMESIKKSY  300
TIGTRFKMRF EGEEAPEQRF TGTVIGCEDA DPKRWKDSKW RCLKVRWDET STISRPEKVS  360
PWKIEPALAP PALNPLPMTR PKRHRSNMVP TSPDSSVLTR EGPSRMIIDH SPASAFTRVL  420
QGQEFSTLRG NLIDGNESDT AEKSVMWSPS LDDEKIDVVS TSKKHGADSW MPAGSGEPTY  480
ADLLSGFGAN IDSSCGVRAT LGDPAIVTAN SIRKHAVYQD GKFNFLGGGS SWSVLPSGLS  540
LNLVDSSQKA HIQAGDLPYQ MRGNATFNGV GDHSMAQCYR IDHSMAHCSR IEQPNGNWSM  600
PPPSSHFDYP VHSTELTSKP MLFQNQDILN LKDGNCKLFG ISLVKNPAIS DPAELHRNVM  660
NEADVIHANR HPIHLHESEL SRGSNLADKS LAINVADKLQ HACTPNLKDS QSKSQGSSTR  720
SCTKVHKQGI ALGRSVDLSK FNNYDELIAE LDQLFEFGGE LLPPKKSWLV VYTDDEGDMM  780
LVGDDPWQEF CGMVRKIFIY RREEVQKMNP RSLTLKGDEN PSVEGEEAKE IKSPAVPSMS  840
APES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein