PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528302.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 436aa MW: 47202.4 Da PI: 7.9523

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.7	6.6e-26	165	209	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ XP_023528302.1 165 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVET 209 79****************************************996 PP
2	QLQ	42.3	2.3e-15	94	129	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ aQ ++L+ Q+l+++y++a++ vPpeLl +i+k XP_023528302.1 94 YFSVAQRHELELQALIFRYMLAGAAVPPELLHPIKK 129 79********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MDFDLKKCRR QAESEEEEVV EEPQHSAKIC KFFVEQPHRL QQQQQQQPSS CSSVLPLFVP 60 GSINDSKASN MLSAFPDSTS SSSSSHRLPR MLGYFSVAQR HELELQALIF RYMLAGAAVP 120 PELLHPIKKS LLSSTAPFFL HHPLQHFPHY PTLLQAGYWG RAAMDPEPGR CRRTDGKKWR 180 CSRDVVAGQK YCERHMHRGR NRSRKPVETT TTKPTSTTTT AAAAAAVSSG GCSLCSNANR 240 VVGGGGGRPF LTVESGNYSC VCGQTPSVDL LHLNQGASSD SLSENKNFYE SHKEGSAGDG 300 KSDGHILRHF FDDWPRSENG GCGSDNSNAS QRMNPTSLSI SVAGNPPSSS SDVSLKLSTG 360 GGSDQGSGDP HLHQNGNIDG EHMHLNWAAG WAATQMASMG GPLAEALRSA NKNSLPTTVL 420 HQLQRTTNSE ATFIST

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MDFDLKKCRR QAESEEEEVV EEPQHSAKIC KFFVEQPHRL QQQQQQQPSS CSSVLPLFVP  60
GSINDSKASN MLSAFPDSTS SSSSSHRLPR MLGYFSVAQR HELELQALIF RYMLAGAAVP  120
PELLHPIKKS LLSSTAPFFL HHPLQHFPHY PTLLQAGYWG RAAMDPEPGR CRRTDGKKWR  180
CSRDVVAGQK YCERHMHRGR NRSRKPVETT TTKPTSTTTT AAAAAAVSSG GCSLCSNANR  240
VVGGGGGRPF LTVESGNYSC VCGQTPSVDL LHLNQGASSD SLSENKNFYE SHKEGSAGDG  300
KSDGHILRHF FDDWPRSENG GCGSDNSNAS QRMNPTSLSI SVAGNPPSSS SDVSLKLSTG  360
GGSDQGSGDP HLHQNGNIDG EHMHLNWAAG WAATQMASMG GPLAEALRSA NKNSLPTTVL  420
HQLQRTTNSE ATFIST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	3e-58	GRF family protein