PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528242.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 359aa MW: 40730.1 Da PI: 6.9109

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	179	198	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_023528242.1 179 FSCPVCFKTFNRYNNMQMHM 198 89*****************9 PP
2	zf-C2H2	14.5	0.0001	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_023528242.1 263 FMCRKCGKAFAVRGDWRTHEKNC 285 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDDPSTNFFT NLFKFNPSPP NPHPPPPPPP PPPPYFLPTH LHAPPSSPPL RQALPLLRLS 60 PTRSSQNNNP PQNFSSSSSS SSAAAAANVS VTVALHIGLP SPSASEMATL LLSSNQNQEE 120 EDDDEDDEEH EEHELEEEEE EEEEEVAAIS GLCLSNSRLN KGQYWIPTPS QILIGPTQFS 180 CPVCFKTFNR YNNMQMHMWG HGSQYRRGPE SLRGTQPTGM LRLPCYCCSP GCRNNIDHPR 240 AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK 300 RSLKDHIKAF GNGHAAYNNS NANNNPDHRH RHHHHRHHRH HGFDEEEDPA YSEVEQDHD

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDDPSTNFFT NLFKFNPSPP NPHPPPPPPP PPPPYFLPTH LHAPPSSPPL RQALPLLRLS  60
PTRSSQNNNP PQNFSSSSSS SSAAAAANVS VTVALHIGLP SPSASEMATL LLSSNQNQEE  120
EDDDEDDEEH EEHELEEEEE EEEEEVAAIS GLCLSNSRLN KGQYWIPTPS QILIGPTQFS  180
CPVCFKTFNR YNNMQMHMWG HGSQYRRGPE SLRGTQPTGM LRLPCYCCSP GCRNNIDHPR  240
AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK  300
RSLKDHIKAF GNGHAAYNNS NANNNPDHRH RHHHHRHHRH HGFDEEEDPA YSEVEQDHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-125	C2H2 family protein