PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528124.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 549aa    MW: 60179 Da    PI: 5.2049
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.82.5e-1181745321374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+ Ll+cA+avs+++l+la+a+L++++ l+  +  +++++a +f++AL  r++r     +  l+p + s ++ +++l  +  f+e +P+lkf+h
  XP_023528124.1 174 LVHSLLACADAVSQNNLNLAEAILKHIKILVDVQTGAVRKVAGFFAQALTYRIYR-----FYPLKPFDCS-SSYTDQL--QIHFYESCPYLKFAH 260
                     689****************************************************.....4455555554.2233333..335************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIle++  +  vH+iDf+++qGlQWp+L+qaLa Rp+gpp + +Tg++sp     + l+++g +L++fAe++gv+fef+ +++k++ dle
  XP_023528124.1 261 FTANQAILESIGLSGSVHVIDFNLQQGLQWPPLIQALALRPGGPPAFYLTGISSP---PGDGLQKVGTKLTNFAEKFGVKFEFRGFYCKNFGDLE 352
                     ******************************************************5...69*********************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+++  E++a+n++++lhrll+ ++ +++     L ++k l+Pkv+++veq a+hn++sF+erf+eal+yys+lfd+le+   + s +  + 
  XP_023528124.1 353 PFMLDLE-SETVAINSIFELHRLLAYPGVIQK----ALTTIKALNPKVITLVEQVANHNGPSFMERFTEALHYYSSLFDALEEASVAGSLDV-VR 441
                     ****996.7***************99999999....*********************************************66644555555.55 PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++e+lgr+i+nvv ceg++r+erhet+++W +r++++GF+ ++l+++a kqa++ll+  ++  +gy+vee++gsl+lgW++rpL+++SaW+
  XP_023528124.1 442 SEEYLGRQICNVVGCEGTDRVERHETVAQWLSRMQSSGFEMIHLGSNAFKQANTLLSAlFHgRNGYKVEENNGSLTLGWHTRPLIATSAWT 532
                     5556**************************************************997526689***************************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MKQDNTHQSP NPAAAETEKL AVGDQDEDEL LAALGYNVRS SDMSDVALKI EQLEMVMGLS  60
EHDGISHLSS NTIHYNPSDM SSWIETMIDE LNNPVHVGDE SIPAIATTAA FTDDSEYDLR  120
VIPGIAAYPQ LNSTTTRKRC KNFDCESVLV KAPSFSEPSR SVVLVDSAET GVHLVHSLLA  180
CADAVSQNNL NLAEAILKHI KILVDVQTGA VRKVAGFFAQ ALTYRIYRFY PLKPFDCSSS  240
YTDQLQIHFY ESCPYLKFAH FTANQAILES IGLSGSVHVI DFNLQQGLQW PPLIQALALR  300
PGGPPAFYLT GISSPPGDGL QKVGTKLTNF AEKFGVKFEF RGFYCKNFGD LEPFMLDLES  360
ETVAINSIFE LHRLLAYPGV IQKALTTIKA LNPKVITLVE QVANHNGPSF MERFTEALHY  420
YSSLFDALEE ASVAGSLDVV RSEEYLGRQI CNVVGCEGTD RVERHETVAQ WLSRMQSSGF  480
EMIHLGSNAF KQANTLLSAL FHGRNGYKVE ENNGSLTLGW HTRPLIATSA WTVPVASGTG  540
TSTGTGGPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein