PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528094.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 369aa MW: 41956.1 Da PI: 5.9898

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C +sFs+ L H+r+H XP_023528094.1 4 HKCRLCFRSFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	13.6	0.00021	238	260	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_023528094.1 238 YKCETCNKVFRSYQALGGHRASH 260 9***********99999998887 PP
3	zf-C2H2	11.4	0.001	290	312	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_023528094.1 290 HECPVCFRVFSSGQALGGHKRSH 312 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDRHKCRLCF RSFSNGRALG GHMRSHLMNL PLPPKPEDPP PPHAHLSEDA DSASFLSSPS 60 SSEGDAEEKG LGYGLRENPK RSIRVVDPEF SFAVDAGSVV LQDRESETES SKNPTRRRSK 120 RTRKLDHHHH QHVHEHHHYS AFKRLQEKKV NQPESWTEAE QVSSISGSTT EQDVAFWLMM 180 LSRDKWTKQR GGYEEDEEEE EEEEDNEDEE EEEVEESMEE TDDSEALKFP KNRNRGNYKC 240 ETCNKVFRSY QALGGHRASH KKIKLSVTYN NPQLVTHREN AASMGERKIH ECPVCFRVFS 300 SGQALGGHKR SHVTAYSSPN SIPPKTPPPK KLGDSFIDLN LPAPFEEDDV SQIELSAVSD 360 ADFVNAIRQ

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDRHKCRLCF RSFSNGRALG GHMRSHLMNL PLPPKPEDPP PPHAHLSEDA DSASFLSSPS  60
SSEGDAEEKG LGYGLRENPK RSIRVVDPEF SFAVDAGSVV LQDRESETES SKNPTRRRSK  120
RTRKLDHHHH QHVHEHHHYS AFKRLQEKKV NQPESWTEAE QVSSISGSTT EQDVAFWLMM  180
LSRDKWTKQR GGYEEDEEEE EEEEDNEDEE EEEVEESMEE TDDSEALKFP KNRNRGNYKC  240
ETCNKVFRSY QALGGHRASH KKIKLSVTYN NPQLVTHREN AASMGERKIH ECPVCFRVFS  300
SGQALGGHKR SHVTAYSSPN SIPPKTPPPK KLGDSFIDLN LPAPFEEDDV SQIELSAVSD  360
ADFVNAIRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-60	C2H2 family protein