PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528060.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 638aa MW: 70738.6 Da PI: 6.7256

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89	4.4e-28	205	258	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++F+ av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_023528060.1 205 KPRVVWSVELHQQFMAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 258 79*****************.******************************8 PP
2	Myb_DNA-binding	40.3	7.2e-13	207	257	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++ av+qlG + +k+I + m+ g+t++++ s++qky+ XP_023528060.1 207 RVVWSVELHQQFMAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 257 678***********************************************7 PP
3	Response_reg	74.9	3e-25	26	134	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ +y +v+ ++ +e+al ll++ + +D++l D+ mp+mdG++ll+ i e +lp+i+++ + ++ + + + G XP_023528060.1 26 VLVVDDDPTCLMILEKMLRICRY-DVTNCSRAEDALSLLRRYKngFDIVLSDVHMPDMDGFKLLEYIGLEM-DLPVIMMSVDDGKNVVMKGVTHG 118 89*******************.***********999999******************6654.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_023528060.1 119 ACDYLIKPVRIEALKN 134 **********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MSTASSSTVR KAGEAVPDQF PVGLRVLVVD DDPTCLMILE KMLRICRYDV TNCSRAEDAL 60 SLLRRYKNGF DIVLSDVHMP DMDGFKLLEY IGLEMDLPVI MMSVDDGKNV VMKGVTHGAC 120 DYLIKPVRIE ALKNIWQHVV RKRKNEWKDL EQSGCIDDVV DRQQKTNEDA DYSSSANEGS 180 WKNSKRRKED VEDLEERDDS STLKKPRVVW SVELHQQFMA AVNQLGIDKA VPKKILELMN 240 VPGLTRENVA SHLQKYRLYL RRVSGITQHQ SNLNNTFMSA QDVFGSSLNG LDLRTLAAAG 300 QLQPQSLATL QAAGFGRSTA KSSMPMPLVD QRNHIFSFEN PKLRFGDEQQ RYLNGSKSMN 360 LLHGIPTTME PKQLANLQQS AQSHGNMTMQ VSTQGSQSSS QPQARAQILK ESTSTSVTRL 420 PPTSQQPILP NGTAGGGYSV VSPASTMLNF PELPGNSFPL QSTPGMSSVV PKGRFPDDVN 480 SNIKRSEGFV PNYDMFRDLH PQKPHDWDLQ HVGVTFDTSQ GSLDVPPSAF AHQGYAASSQ 540 QNGQNRNAST AGKAMFLLDE RSDNGNKQSM SQQLDPRFVN GSVRVKAERA PDTSSQPDLF 600 SEHFGPEDLM SAVLKQQQGS IAAAESELEW MFHHNTPV

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MSTASSSTVR KAGEAVPDQF PVGLRVLVVD DDPTCLMILE KMLRICRYDV TNCSRAEDAL  60
SLLRRYKNGF DIVLSDVHMP DMDGFKLLEY IGLEMDLPVI MMSVDDGKNV VMKGVTHGAC  120
DYLIKPVRIE ALKNIWQHVV RKRKNEWKDL EQSGCIDDVV DRQQKTNEDA DYSSSANEGS  180
WKNSKRRKED VEDLEERDDS STLKKPRVVW SVELHQQFMA AVNQLGIDKA VPKKILELMN  240
VPGLTRENVA SHLQKYRLYL RRVSGITQHQ SNLNNTFMSA QDVFGSSLNG LDLRTLAAAG  300
QLQPQSLATL QAAGFGRSTA KSSMPMPLVD QRNHIFSFEN PKLRFGDEQQ RYLNGSKSMN  360
LLHGIPTTME PKQLANLQQS AQSHGNMTMQ VSTQGSQSSS QPQARAQILK ESTSTSVTRL  420
PPTSQQPILP NGTAGGGYSV VSPASTMLNF PELPGNSFPL QSTPGMSSVV PKGRFPDDVN  480
SNIKRSEGFV PNYDMFRDLH PQKPHDWDLQ HVGVTFDTSQ GSLDVPPSAF AHQGYAASSQ  540
QNGQNRNAST AGKAMFLLDE RSDNGNKQSM SQQLDPRFVN GSVRVKAERA PDTSSQPDLF  600
SEHFGPEDLM SAVLKQQQGS IAAAESELEW MFHHNTPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	0.0	ARR-B family protein