PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527558.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 617aa MW: 69465.7 Da PI: 4.8568

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	441	478	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr+++P+ a K s Lek+++++ +Lq XP_023527558.1 441 RQLIQDRIKELRQMVPNgA------KCSIDGLLEKTIKHMLYLQ 478 67799**********66......999999*********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MDFSLQLWIH YHQSLTVGSV ANSGNHSWVF LENIFTSDLT SASIYEGPTE WLIQYASGIK 60 TILLVPVLPF GVLQLGSLQM VTENLSVVAS IKDRFSAINF IDGNATSIAP HKGAWPLCAS 120 VVPSPFESLD EQANFTTYMM EAQNHGAIEN IKPPVPTLNP SVTIQDELTV TRRIRLETLH 180 GEGDMLRINM EASFAPLYQS IKAGELEFSD LFSLESLLPP CSRLRNDETG LIESTPRIVN 240 SYPVDNVVEQ QSGQNLVTKK EYGTADSLFS FPDDCELQKA FGPAFFAQKH TTDFSYDLSS 300 TINDTTSSVL SSRDFKEGDI ELLLEAMMPA FPNSVDTFSN NTINGRIAPV VRNSSLSAKT 360 CESESSAMVM DDPALWIFPE STATEIGRKT LTSLSTSNST VINELEENDR DITRHRKGMK 420 RFNCSPEIKV TSKTRQRPRD RQLIQDRIKE LRQMVPNGAK CSIDGLLEKT IKHMLYLQRV 480 TDQAEKLKQL AQQEEGFDSE YCTDLENESF QSNGTSWTRA FDIGSELQVC PIVVEDLEYH 540 GHMLIKMLCN DTELFLEIAQ IIRNLELTIL KGVVERHSNN SWAHFVVEAP RGFHRMDVFW 600 PLMHLLQRQR NPISCRI

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MDFSLQLWIH YHQSLTVGSV ANSGNHSWVF LENIFTSDLT SASIYEGPTE WLIQYASGIK  60
TILLVPVLPF GVLQLGSLQM VTENLSVVAS IKDRFSAINF IDGNATSIAP HKGAWPLCAS  120
VVPSPFESLD EQANFTTYMM EAQNHGAIEN IKPPVPTLNP SVTIQDELTV TRRIRLETLH  180
GEGDMLRINM EASFAPLYQS IKAGELEFSD LFSLESLLPP CSRLRNDETG LIESTPRIVN  240
SYPVDNVVEQ QSGQNLVTKK EYGTADSLFS FPDDCELQKA FGPAFFAQKH TTDFSYDLSS  300
TINDTTSSVL SSRDFKEGDI ELLLEAMMPA FPNSVDTFSN NTINGRIAPV VRNSSLSAKT  360
CESESSAMVM DDPALWIFPE STATEIGRKT LTSLSTSNST VINELEENDR DITRHRKGMK  420
RFNCSPEIKV TSKTRQRPRD RQLIQDRIKE LRQMVPNGAK CSIDGLLEKT IKHMLYLQRV  480
TDQAEKLKQL AQQEEGFDSE YCTDLENESF QSNGTSWTRA FDIGSELQVC PIVVEDLEYH  540
GHMLIKMLCN DTELFLEIAQ IIRNLELTIL KGVVERHSNN SWAHFVVEAP RGFHRMDVFW  600
PLMHLLQRQR NPISCRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	5e-45	bHLH family protein