PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023527554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 25116.1 Da PI: 7.1811 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 7 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll ++v ++G g+W+++a+ g++Rt+k+c++rw++yl XP_023527554.1 7 KGPWTADEDSLLSHYVILHGEGHWNSVAHSTGLKRTGKSCRLRWLNYL 54 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 60 | 103 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Iar ++ gRt++++k++w++ XP_023527554.1 60 RGNITLQEQLLILQLHSRWGNR-WSKIARFLP-GRTDNEIKNYWRT 103 7899******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MADHVKKGPW TADEDSLLSH YVILHGEGHW NSVAHSTGLK RTGKSCRLRW LNYLRPNVRR 60 GNITLQEQLL ILQLHSRWGN RWSKIARFLP GRTDNEIKNY WRTRVQKQAK QVKCDVNSQR 120 FHDTMRLVWI PRLVERIAAT SGQSLPACTE TSTSTPIISE STLDDNSVNV DVSASCSDTS 180 NWGDGFEAGW WEGDEVESSF ESLWTEENIR FLQQQLFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-68 | MYB family protein |