PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527263.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 704aa MW: 76909.2 Da PI: 6.4566

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.8e-07	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd C +aHg XP_023527263.1 277 TCPDFRK-GACRRGDMCEYAHG 297 6****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MNNLTVETED AFSSLLELAA NDDVDAFKRS IERDLSGIDE IGFWYGRLRG SKQMTNEQRT 60 PLMVAATYGS IEVLKLILSL SCADVNRTVG LDRSTALHCA ASGGAANAVD VVKLLLAAGA 120 DPNMVDGNGH RPVDVVVAPL RHAELKSTLT ELLKTNGFSG DGNLDVLTGV RNSLSPRPSS 180 PLNAPSFTSE LVSSPTKSKL SDFSMYPASE KKEYPVDLSL PDIKNSIYST DEFRMYSFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVTCPD FRKGACRRGD MCEYAHGVFE 300 CWLHPAQYRT RLCKDGTNCS RRVCFFAHTT EELRPLYVST GSAVPSPRSC TSGASAMDYT 360 TVMNLLPGSP SSVPVMSPSP FTPPMSPSAN GMSHPSVAWP QPNVPALLLP GSNIQSSRLR 420 SSLSARDIPV EDFDYLSDFE LQQQQQLVND LNCLSQPPLS SNSLSRSGRL KTMTPSNLDD 480 LFSAESSSPR YSDQALSSAV FSPTHKSAVI NQFQQQQNML SPINTNFSPK NVDHPLLQAS 540 FGVPSSGRMS PRNLEPPISP VGSRLSMLAQ REKQQQFRSL SSRELGANSA SIVGSPASSW 600 SKWGPSNGRP DWAVNADEMG KLRRSSSFEL GNNGEEPDLS WVQSLVKESP TEIKEKQAHP 660 NLGGDSFVSG ESSNVNSQME SVDHAALGAW LEQMQLDHLV ALQN

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MNNLTVETED AFSSLLELAA NDDVDAFKRS IERDLSGIDE IGFWYGRLRG SKQMTNEQRT  60
PLMVAATYGS IEVLKLILSL SCADVNRTVG LDRSTALHCA ASGGAANAVD VVKLLLAAGA  120
DPNMVDGNGH RPVDVVVAPL RHAELKSTLT ELLKTNGFSG DGNLDVLTGV RNSLSPRPSS  180
PLNAPSFTSE LVSSPTKSKL SDFSMYPASE KKEYPVDLSL PDIKNSIYST DEFRMYSFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVTCPD FRKGACRRGD MCEYAHGVFE  300
CWLHPAQYRT RLCKDGTNCS RRVCFFAHTT EELRPLYVST GSAVPSPRSC TSGASAMDYT  360
TVMNLLPGSP SSVPVMSPSP FTPPMSPSAN GMSHPSVAWP QPNVPALLLP GSNIQSSRLR  420
SSLSARDIPV EDFDYLSDFE LQQQQQLVND LNCLSQPPLS SNSLSRSGRL KTMTPSNLDD  480
LFSAESSSPR YSDQALSSAV FSPTHKSAVI NQFQQQQNML SPINTNFSPK NVDHPLLQAS  540
FGVPSSGRMS PRNLEPPISP VGSRLSMLAQ REKQQQFRSL SSRELGANSA SIVGSPASSW  600
SKWGPSNGRP DWAVNADEMG KLRRSSSFEL GNNGEEPDLS WVQSLVKESP TEIKEKQAHP  660
NLGGDSFVSG ESSNVNSQME SVDHAALGAW LEQMQLDHLV ALQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein