PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526790.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 492aa MW: 54718.3 Da PI: 5.5162

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	5e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_023526790.1 12 VPCDFCNEQVAILYCRADSAKLCLFCDKHVHSAnllsrkH 51 67***************************99545555556 PP
2	zf-B_box	24.1	7.2e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++++++ C +++ lC++C H + H+++p+ XP_023526790.1 54 SQICDNCRSEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHERTPI 99 689************************99955999999998876 PP
3	CCT	61.8	2.2e-21	444	488	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk++e XP_023526790.1 444 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKASE 488 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MVCSKSTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC 60 RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHERTPIE GFTGCPSALE LVSLWGFDLG 120 EKKMEESEML VQNWVGSQDL VMPIDHWACR ASATAFNDLV VPNDNPYLFA NLNCTDAASM 180 LKRQNPSCGK HKQVIYKQLV ELLKRDFEGG DDGVDETRDG DAGGEEVGLQ NLVPETTNGV 240 CYWQEDLEAR QVHEEDNGVF VDAAAPPPQP LLQQQTSFTS LLTMPPHVGL KESERIGDET 300 NVCDGNPTRQ SIQIWDFNLG RLRGHKDSSS FEDAYGTGNM GFTIKNFDDF FKETSPTSPK 360 LLGETYQINC SSTHDDIPSF NGNINNTTLS QGAATCESGN LSKSKLKCGY KNAQPIEKPI 420 IVNVDSILST STTKADLELL AQNRGNAMQR YKEKRKTRRY DKYIRYESRK ARADTRKRVK 480 GRFVKASEAP VF

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MVCSKSTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC  60
RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHERTPIE GFTGCPSALE LVSLWGFDLG  120
EKKMEESEML VQNWVGSQDL VMPIDHWACR ASATAFNDLV VPNDNPYLFA NLNCTDAASM  180
LKRQNPSCGK HKQVIYKQLV ELLKRDFEGG DDGVDETRDG DAGGEEVGLQ NLVPETTNGV  240
CYWQEDLEAR QVHEEDNGVF VDAAAPPPQP LLQQQTSFTS LLTMPPHVGL KESERIGDET  300
NVCDGNPTRQ SIQIWDFNLG RLRGHKDSSS FEDAYGTGNM GFTIKNFDDF FKETSPTSPK  360
LLGETYQINC SSTHDDIPSF NGNINNTTLS QGAATCESGN LSKSKLKCGY KNAQPIEKPI  420
IVNVDSILST STTKADLELL AQNRGNAMQR YKEKRKTRRY DKYIRYESRK ARADTRKRVK  480
GRFVKASEAP VF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-107	CO-like family protein