PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526533.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 428aa MW: 46550.3 Da PI: 9.8133

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	195	218	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg+ F L+ H+++ H XP_023526533.1 195 FPCPECGEIFMKAQALELHQSVrH 218 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MASAMAKPKT QRKLTRQSHE NQKPKAQKAE KPPSWAVVRG IFSCKYLQPQ QQQQQNQLPR 60 KEKQTEQATE ESSKNCKKMR CSGSLCSNTK VTYRLEVAAS PDAHKKRALA SSMGSKNNES 120 LSSSRSTKAP PLNEQNGVLS ATTSSLSASS SSNSSNGASF RGMPFRRFYG CYECKMVIDP 180 VLGMTRDPSL RATIFPCPEC GEIFMKAQAL ELHQSVRHAV SELGPEDTSK NIVEIIFQSS 240 WLKKQAPICK IERILKVQNT AKTISKFEEY RDSIKAKAIK LSKKHPRCIA DGNELLRFHC 300 TTLACSLGLN GSSNLCSSIP QCNVCSIIKN GFKVAAEATG GDAGKGILTT ATSGKAHDSA 360 GISSDGNDKR AMLVCRVIAG RVKKSSEGTM EDYDSLAGAA GMYSNLDELY VFSPKAILPC 420 FVVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MASAMAKPKT QRKLTRQSHE NQKPKAQKAE KPPSWAVVRG IFSCKYLQPQ QQQQQNQLPR  60
KEKQTEQATE ESSKNCKKMR CSGSLCSNTK VTYRLEVAAS PDAHKKRALA SSMGSKNNES  120
LSSSRSTKAP PLNEQNGVLS ATTSSLSASS SSNSSNGASF RGMPFRRFYG CYECKMVIDP  180
VLGMTRDPSL RATIFPCPEC GEIFMKAQAL ELHQSVRHAV SELGPEDTSK NIVEIIFQSS  240
WLKKQAPICK IERILKVQNT AKTISKFEEY RDSIKAKAIK LSKKHPRCIA DGNELLRFHC  300
TTLACSLGLN GSSNLCSSIP QCNVCSIIKN GFKVAAEATG GDAGKGILTT ATSGKAHDSA  360
GISSDGNDKR AMLVCRVIAG RVKKSSEGTM EDYDSLAGAA GMYSNLDELY VFSPKAILPC  420
FVVIYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	6e-87	C2H2 family protein