PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526465.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 483aa MW: 52579 Da PI: 9.7989

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526465.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_023526465.1 68 FICEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	12.2	0.00056	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_023526465.1 145 WKCDKCSKKYAVQSDWKAHSKTC 167 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MSTNPFSLLS STPTSTPFAH HPDANPSPNP KPKPSAAAKK KRNLPGTPDP DAEVVALSPK 60 SLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT NKEPIKKKVY ICPEKTCVHH 120 DPSRALGDLT GVKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALAEES ARITTVSATN ILNNLRNDSV LLHQQDQSLI DHQTNNLQTL 240 GDVPALSQFT HSDHFLRDFE DHQHKNRSPF SLWLNNNNNI SNFYGPSSSS SNLFGSIAET 300 GLSMLPVFEK EDVEKKGSLS KATSSAAALL SGQSSSVVSS SPMSATALLQ KAALMGSTRS 360 STNNNSPLID AGAFGVMNSS SLSSSSSSNA VSLNSLNKSR SMTMADSVQM VGTNSDLSSN 420 ILSQLLMPLN NGNNSMKSND QTRDFLGVGG NGEAPQPPFL PPELAKFAAI NSTMGLSQFA 480 ANH

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MSTNPFSLLS STPTSTPFAH HPDANPSPNP KPKPSAAAKK KRNLPGTPDP DAEVVALSPK  60
SLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT NKEPIKKKVY ICPEKTCVHH  120
DPSRALGDLT GVKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES ARITTVSATN ILNNLRNDSV LLHQQDQSLI DHQTNNLQTL  240
GDVPALSQFT HSDHFLRDFE DHQHKNRSPF SLWLNNNNNI SNFYGPSSSS SNLFGSIAET  300
GLSMLPVFEK EDVEKKGSLS KATSSAAALL SGQSSSVVSS SPMSATALLQ KAALMGSTRS  360
STNNNSPLID AGAFGVMNSS SLSSSSSSNA VSLNSLNKSR SMTMADSVQM VGTNSDLSSN  420
ILSQLLMPLN NGNNSMKSND QTRDFLGVGG NGEAPQPPFL PPELAKFAAI NSTMGLSQFA  480
ANH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-101	C2H2 family protein