PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023526424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 31155.2 Da PI: 9.4115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.2e-07 | 100 | 125 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ XP_023526424.1 100 KTRMCNKYNSAEGCKFGDKCHFAHGE 125 899*******99************96 PP | |||||||
2 | zf-CCCH | 31.7 | 2.6e-10 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G C +G+rC+FaHg XP_023526424.1 262 YKTKLCDNFGK-GSCTFGERCHFAHG 286 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MDYRKRGKPE VGLNANGGFK KSKQEMEYLS TGVASKSKPC TKFYSTTGCQ FGEGCHFLHY 60 VPGGYNAVAQ MMNLEPAPPA PRSIAAPHPM SNGSTTQDVK TRMCNKYNSA EGCKFGDKCH 120 FAHGEWELGR PSAPSHEDPR ATGYFPSRLP SRMSAAPAGP AASFGASATA KISVDASLAG 180 AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGT FDQIKEASAM VRELIATVSM 240 AGPPKAATRA TGGPAAPAGS NYKTKLCDNF GKGSCTFGER CHFAHGSAEL RKSGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-54 | C3H family protein |