PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023526424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 295aa    MW: 31155.2 Da    PI: 9.4115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023526424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.2e-07100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  XP_023526424.1 100 KTRMCNKYNSAEGCKFGDKCHFAHGE 125
                     899*******99************96 PP

2zf-CCCH31.72.6e-10262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++f + G C +G+rC+FaHg
  XP_023526424.1 262 YKTKLCDNFGK-GSCTFGERCHFAHG 286
                     9**********.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDYRKRGKPE VGLNANGGFK KSKQEMEYLS TGVASKSKPC TKFYSTTGCQ FGEGCHFLHY  60
VPGGYNAVAQ MMNLEPAPPA PRSIAAPHPM SNGSTTQDVK TRMCNKYNSA EGCKFGDKCH  120
FAHGEWELGR PSAPSHEDPR ATGYFPSRLP SRMSAAPAGP AASFGASATA KISVDASLAG  180
AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGT FDQIKEASAM VRELIATVSM  240
AGPPKAATRA TGGPAAPAGS NYKTKLCDNF GKGSCTFGER CHFAHGSAEL RKSGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-54C3H family protein