PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526399.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 443aa MW: 49052.9 Da PI: 8.6895

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023526399.1 70 FVCEICSKGFQRDQNLQLHKRGH 92 89******************988 PP
2	zf-C2H2	13	0.00032	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023526399.1 147 WKCDKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MEDTMSNLTS ASGEPSACSG NHSDHLPANY SGQYFSAPPP KKKRNLPGNP DPDAEVVALS 60 PKTLMATNRF VCEICSKGFQ RDQNLQLHKR GHNLPWKLKQ RANKEVIRKK VYVCPETSCV 120 HHDPLRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITTSN PNNNQNLPIS SSISHLNFQN PLDINSFSLK 240 KEHQQIPTTN NFTIPPWLGC PSSRSSPLQD HQSLIMINND QIMNPNNPLH LIPSSSPSPH 300 MSATALLQKA AQMGATMSNS NNNGNISSSS SSRDNHHQIL MAGSEGVGVS HALPLHTNKS 360 NNYNDFEGAC FELERFGGGF EKDEIFKGRS DEGLSTRDFL GLRAISHTEF LNNIAAVGYS 420 NCINGGAPQT PRTQFHNQPG WQG

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MEDTMSNLTS ASGEPSACSG NHSDHLPANY SGQYFSAPPP KKKRNLPGNP DPDAEVVALS  60
PKTLMATNRF VCEICSKGFQ RDQNLQLHKR GHNLPWKLKQ RANKEVIRKK VYVCPETSCV  120
HHDPLRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARAITTSN PNNNQNLPIS SSISHLNFQN PLDINSFSLK  240
KEHQQIPTTN NFTIPPWLGC PSSRSSPLQD HQSLIMINND QIMNPNNPLH LIPSSSPSPH  300
MSATALLQKA AQMGATMSNS NNNGNISSSS SSRDNHHQIL MAGSEGVGVS HALPLHTNKS  360
NNYNDFEGAC FELERFGGGF EKDEIFKGRS DEGLSTRDFL GLRAISHTEF LNNIAAVGYS  420
NCINGGAPQT PRTQFHNQPG WQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	110	KLKQRANKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-120	C2H2 family protein