PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023526398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 443aa MW: 49052.9 Da PI: 8.6895 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023526398.1 70 FVCEICSKGFQRDQNLQLHKRGH 92 89******************988 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023526398.1 147 WKCDKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 443 aa Download sequence |
MEDTMSNLTS ASGEPSACSG NHSDHLPANY SGQYFSAPPP KKKRNLPGNP DPDAEVVALS 60 PKTLMATNRF VCEICSKGFQ RDQNLQLHKR GHNLPWKLKQ RANKEVIRKK VYVCPETSCV 120 HHDPLRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITTSN PNNNQNLPIS SSISHLNFQN PLDINSFSLK 240 KEHQQIPTTN NFTIPPWLGC PSSRSSPLQD HQSLIMINND QIMNPNNPLH LIPSSSPSPH 300 MSATALLQKA AQMGATMSNS NNNGNISSSS SSRDNHHQIL MAGSEGVGVS HALPLHTNKS 360 NNYNDFEGAC FELERFGGGF EKDEIFKGRS DEGLSTRDFL GLRAISHTEF LNNIAAVGYS 420 NCINGGAPQT PRTQFHNQPG WQG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 97 | 110 | KLKQRANKEVIRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-120 | C2H2 family protein |