PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526052.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 196aa MW: 22593.4 Da PI: 7.9483

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.1	1.3e-20	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G ++Wk+Ia++ g++R++k+c++rw++yl XP_023526052.1 31 KGAWTAEEDQKLAEVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYL 78 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.8e-16	84	129	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_023526052.1 84 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 129 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MTEEESVKRK VSQVEGDINE AENMRNGGVN KGAWTAEEDQ KLAEVIAIHG AKRWKSIAAK 60 AGLNRCGKSC RLRWLNYLRP NIKRGNISDQ EEDLILRLHK LLGNRWSLIA GRLPGRTDNE 120 IKNYWNSHLS KKLNLQSEKE SDILKRKVCK RKVDTGSREE ETSQECENST NLEYDVDNLF 180 DFSNEGPDLE WMSKFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	9e-55	MYB family protein