PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525886.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 530aa MW: 58344.6 Da PI: 6.6917

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.6	1.7e-16	340	386	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+riN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_023525886.1 340 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 386 5***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MNSCFPDWNF EGDLPPAIHK KSIGHEHEEL VELLWRNGQV VLQSQKGRKS NLISNESGQF 60 QKLNQPVCRS SCGNSSSLIQ EDETVSWIQD PVDDSFEKEF CSNFFSELPL VNPIEIVKQP 120 TKHDGKHPRF GVFDTTSKHP TGLAEFLTNS MPPPRFQCLD STRSNKDLGD LGEMVNSSRV 180 CVPLKGDLGS SNGGRECGNL IQVEGRDCSA MTVGSSHCGS NQVPNPNDLD VSRVSTSGFG 240 NAGLSAGLSK EDNRKMVPQS ERDKAETMDP TTTSSSGGSG SSMDRSRTIG QSTGGNSNKR 300 KGRDREESEC QSETAELESA EGNRTAPRSG SSRRTRVAEV HNLSERRRRE RINEKMKALQ 360 ELIPHCNKTD KASMLDEAIE YLKSLQLQLQ VMWMGSGMAP MMFPSVQHYM SRMAMGIGMA 420 QPSMPSIHNS MQLPRVPIVD QSVSVTPMPN QPMICQPQIF NPMNYQNQMQ NPALQEQYAR 480 LMGFHHMQPA SQPINVFRFC PPSVLQSQTV AAPGPAGGPM TNDILNGNLG

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MNSCFPDWNF EGDLPPAIHK KSIGHEHEEL VELLWRNGQV VLQSQKGRKS NLISNESGQF  60
QKLNQPVCRS SCGNSSSLIQ EDETVSWIQD PVDDSFEKEF CSNFFSELPL VNPIEIVKQP  120
TKHDGKHPRF GVFDTTSKHP TGLAEFLTNS MPPPRFQCLD STRSNKDLGD LGEMVNSSRV  180
CVPLKGDLGS SNGGRECGNL IQVEGRDCSA MTVGSSHCGS NQVPNPNDLD VSRVSTSGFG  240
NAGLSAGLSK EDNRKMVPQS ERDKAETMDP TTTSSSGGSG SSMDRSRTIG QSTGGNSNKR  300
KGRDREESEC QSETAELESA EGNRTAPRSG SSRRTRVAEV HNLSERRRRE RINEKMKALQ  360
ELIPHCNKTD KASMLDEAIE YLKSLQLQLQ VMWMGSGMAP MMFPSVQHYM SRMAMGIGMA  420
QPSMPSIHNS MQLPRVPIVD QSVSVTPMPN QPMICQPQIF NPMNYQNQMQ NPALQEQYAR  480
LMGFHHMQPA SQPINVFRFC PPSVLQSQTV AAPGPAGGPM TNDILNGNLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	350	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	3e-65	bHLH family protein