PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525781.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 505aa MW: 55535.1 Da PI: 8.8265

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023525781.1 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.7	0.00037	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023525781.1 161 WKCDKCSKRYAVQSDWKAHSKTC 183 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MIKSLLFQAQ AMEENLSNLT SASGEASSCS GNRSDQIPTN YSGGNYFSAP PPPPKRKRNL 60 PGNPDPDAEV VALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKPRANKEV 120 IRKKVYVCPE TSCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVQSDWKAHS 180 KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARSI TANPILMTNN NPPLLPNPIS 240 SISHFNFQPQ THFNPLDINS FALKKEHQNP QSSTNFIPPW LANHNQDLNH LIINPNHLGQ 300 TSLNLPTASS SPSPHMSATA LLQKAAQMGA TMSSNNNAEA PHTIIRPQHS QDHHVSDSSA 360 TTNNATCNFG LNLSSSSSSR DNQNQVLMGT EAGPGLSPAL PLYRNKTLVQ TTFMNNNNNT 420 TFSPSAFEGA SFEIDEFGGM LKKDEIFNDN PASEGLSTRD FLGLRAMSHT EFLSNIAAAG 480 YGNCINGGAG QTPPTQIRNQ PSWQG

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MIKSLLFQAQ AMEENLSNLT SASGEASSCS GNRSDQIPTN YSGGNYFSAP PPPPKRKRNL  60
PGNPDPDAEV VALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKPRANKEV  120
IRKKVYVCPE TSCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARSI TANPILMTNN NPPLLPNPIS  240
SISHFNFQPQ THFNPLDINS FALKKEHQNP QSSTNFIPPW LANHNQDLNH LIINPNHLGQ  300
TSLNLPTASS SPSPHMSATA LLQKAAQMGA TMSSNNNAEA PHTIIRPQHS QDHHVSDSSA  360
TTNNATCNFG LNLSSSSSSR DNQNQVLMGT EAGPGLSPAL PLYRNKTLVQ TTFMNNNNNT  420
TFSPSAFEGA SFEIDEFGGM LKKDEIFNDN PASEGLSTRD FLGLRAMSHT EFLSNIAAAG  480
YGNCINGGAG QTPPTQIRNQ PSWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	124	KLKPRANKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-116	C2H2 family protein