PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525693.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 1005aa MW: 110805 Da PI: 6.4184

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.2e-41	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_023525693.1 154 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNP 231 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence
METGYGGEAC QLYGMGSRDL RAAVGKKSLE WDLNDWKWDG DLFIARPLNL VESDHLGSQV 60 FPIVSGIPLT GGSSNSSSSC SDEANTGIEK GKREVEKRRR DNVMEDENLN DEARSLSLKV 120 GGNGCQIVEK EAGNWEGSSG KKTKLSGGNS SRAVCQVEDC GADLSNAKDY HRRHKVCEMH 180 SKASNALVAN VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKNN PDNVVNGNSP 240 PDEQTSSYLL LTLMRILANL HSNGSNKTTD QDLLSNLIRI LACQSGEHGG KNRSGILHEP 300 QNLLNGAKSD LVCTFLSNGP QVPLRSSKQP DTIPISETPV QATVRGGDTP AISSVKPSTS 360 NSPPAYSEIR DNTVGQCKMM NFDLNDVYVD SDDGMEDIER QARPVVHMGT SSLECPSWVQ 420 QDSHQSSPPQ TSGNSDSASA HSPSSSAGEA QSRTDRIILK LFGKAPNDFP HVLRAQVLNW 480 LSHSPTEIES YIRPGCVVLT IYLRQTEAAW NDLCHDLSTS LNRLLDVSDE AFWRTGWVYV 540 RVQHQIAFVY HGQVVVDTSL PLRNKNYCRI TSVNPVAVPL SKKAIFSVKG INLTRSTTRL 600 LCAIEGTYLT QEASDDSTES DDNSNARDDS QCVTFSCSIP VVYGRGFIEA EDDGLSSSSF 660 PFIVAEEDVC TEICTLQSAL EFTEICSNSG ETTELEGRSN AMEFIHEIGW LFHRNHLKSR 720 LGNLDPNENL FSLSRFKWLV EFSMDHDWCA VVKKLLDVLL DGTVDFGDHP SLNFALTEMS 780 LLHRAVRKNS RSLVELLLGY PSKVKDSSSS DGSTSSFLFR PDVVGPAGLT PLHIAAGKDD 840 SMDVLDALTN DPGMVGVEAW KSARDVTGST PEDYARLRGH YSYIRLVQRK INKRSSAGHV 900 VLDIPSTVSD GSWNQKQNTD MMTSSRFEIG RTKLKHSQQD CSRCVMKPSG FGTSSKASLV 960 YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY VFRPFRWELL EYGTS

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence

METGYGGEAC QLYGMGSRDL RAAVGKKSLE WDLNDWKWDG DLFIARPLNL VESDHLGSQV  60
FPIVSGIPLT GGSSNSSSSC SDEANTGIEK GKREVEKRRR DNVMEDENLN DEARSLSLKV  120
GGNGCQIVEK EAGNWEGSSG KKTKLSGGNS SRAVCQVEDC GADLSNAKDY HRRHKVCEMH  180
SKASNALVAN VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKNN PDNVVNGNSP  240
PDEQTSSYLL LTLMRILANL HSNGSNKTTD QDLLSNLIRI LACQSGEHGG KNRSGILHEP  300
QNLLNGAKSD LVCTFLSNGP QVPLRSSKQP DTIPISETPV QATVRGGDTP AISSVKPSTS  360
NSPPAYSEIR DNTVGQCKMM NFDLNDVYVD SDDGMEDIER QARPVVHMGT SSLECPSWVQ  420
QDSHQSSPPQ TSGNSDSASA HSPSSSAGEA QSRTDRIILK LFGKAPNDFP HVLRAQVLNW  480
LSHSPTEIES YIRPGCVVLT IYLRQTEAAW NDLCHDLSTS LNRLLDVSDE AFWRTGWVYV  540
RVQHQIAFVY HGQVVVDTSL PLRNKNYCRI TSVNPVAVPL SKKAIFSVKG INLTRSTTRL  600
LCAIEGTYLT QEASDDSTES DDNSNARDDS QCVTFSCSIP VVYGRGFIEA EDDGLSSSSF  660
PFIVAEEDVC TEICTLQSAL EFTEICSNSG ETTELEGRSN AMEFIHEIGW LFHRNHLKSR  720
LGNLDPNENL FSLSRFKWLV EFSMDHDWCA VVKKLLDVLL DGTVDFGDHP SLNFALTEMS  780
LLHRAVRKNS RSLVELLLGY PSKVKDSSSS DGSTSSFLFR PDVVGPAGLT PLHIAAGKDD  840
SMDVLDALTN DPGMVGVEAW KSARDVTGST PEDYARLRGH YSYIRLVQRK INKRSSAGHV  900
VLDIPSTVSD GSWNQKQNTD MMTSSRFEIG RTKLKHSQQD CSRCVMKPSG FGTSSKASLV  960
YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY VFRPFRWELL EYGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein