PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525482.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 199aa    MW: 21725 Da    PI: 7.147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.57.2e-41481471100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C ++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r+da+ss+vyeA+ar+rdPvyG++g i +lq q+++l+a+la
  XP_023525482.1  48 PCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQTQVSELQAQLA 142
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023525482.1 143 KARAE 147
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MAYVAKCTSS PPTPTTLPNP PLSSSATNFV SPPTSQQSST PVAVVLSPCA ACKILRRRCI  60
EKCVLAPYFP PTEPLKFTIA HRVFGASNII KFLQELPECQ RTDAVSSMVY EANARLRDPV  120
YGSAGAICQL QTQVSELQAQ LAKARAEVAN MQQQQANLLA LICMEMKQSA EPIWASHLAD  180
TSWFLDDATL SAPWEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-66LBD family protein