PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525465.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 576aa    MW: 64765.2 Da    PI: 4.5605
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.39.4e-1332065762374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+ecA a+s++++e+a+a++++l+ ++s +gdp qR+aay++e+Laarl++s++ lykal+++e +   ss++laa+++++ev+P++kf+++
  XP_023525465.1 206 RQILIECASAISEDNFEEASAMIEQLRGMVSVQGDPSQRIAAYLVEGLAARLLESGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFM 297
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea++ e+r+HiiDfd+sqG+Q++ L+q La++p++pp+lR+Tgv++pes+      l+++g+rL+++A++l+vpfef++ +a++  d+
  XP_023525465.1 298 AANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVqrPVGGLRHIGQRLEQLAKALRVPFEFHA-IASNALDV 391
                     *******************************************************99888899***********************.6999999* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+ +pgEal+Vn+++ lh+++desvs+ + rd++L++vksl+Pk+v+vveq+++ n+++F+ rf+e+ +yy+a++dsl+++lpr+s++ri+
  XP_023525465.1 392 TPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNANTTPFVSRFIETYNYYAAVYDSLDVTLPRDSQDRIN 486
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+++ivn+vaceg+er+er e ++kWr+r+++aGF++ ++sek+++ ++ l+ + + + +++ ee g+l +gW++++L+++SaWr
  XP_023525465.1 487 VERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSEKVTDPIRKLIMEEYCERFKMYEEMGTLHFGWEEKSLIVTSAWR 576
                     ***********************************************************99888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    
MSLVGPSDPS PLSYGTRKLY SLKGTKNASD LSTQIFGSEK NRTMYMNDSY CSESYDKYFL  60
DFPIEELSVS GISTDSFHPN AALYGLRADS LSPLCDSFTR FDAYQSNLYS VCLESTSPEQ  120
LDFEDDQVRQ KLQELERDLL GEPDSADYED EMFANGQSMD IDSEWANSIQ DALLHDSPKE  180
STSMDSNFST ISSNKDASQI SSQNPRQILI ECASAISEDN FEEASAMIEQ LRGMVSVQGD  240
PSQRIAAYLV EGLAARLLES GKCLYKALRC KEPPSSDRLA AMQILFEVCP CFKFGFMAAN  300
CAIIEAAKDE KRIHIIDFDV SQGTQYIKLI QMLAAQPGKP PHLRLTGVDD PESVQRPVGG  360
LRHIGQRLEQ LAKALRVPFE FHAIASNALD VTPSMLASRP GEALIVNFAF LLHHMPDESV  420
STVNLRDRLL RMVKSLNPKL VTVVEQDMNA NTTPFVSRFI ETYNYYAAVY DSLDVTLPRD  480
SQDRINVERQ CLAKDIVNIV ACEGEERVER YEVAGKWRAR MTMAGFTSCS MSEKVTDPIR  540
KLIMEEYCER FKMYEEMGTL HFGWEEKSLI VTSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein