PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525363.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 424aa MW: 46438.1 Da PI: 9.6709

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	184	206	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F+ ++L+ H+ + H XP_023525363.1 184 PCPQCGEMFPKMESLELHQAVrH 206 7******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MALSTSLAIN AEKSRKMKPI NTKRRKKHQN PPPSQPPPPP PTSAQSSWDQ IKNLITCKQV 60 EATRVHEPTK RSPANLKLVS SCSSICRFRD VVHGNAKIVH RPDNSPETSS LGQETRLLTT 120 KATNGSSSRS LSAPTRTKNG ASASYSSSSS SSRGLQLRKL SGCYECHTII EPSRYPIPRS 180 SICPCPQCGE MFPKMESLEL HQAVRHAVSE LGPDDSGRNI VEIIFKSSWL KIDRPICKIE 240 RILKVHNTQR TIQRFEDCRD AVKTRALACA RKNPRCAADG NELLRFHCSE LLCDLGSRGS 300 TGLCGSIPGC RVCSVIRHGF QCKPGEPAGV RTTASSGRAH DSFECGDGRR RAMLVCRVIA 360 GRVKRIAEDL SAAAVEEENL SAAAASYDSV SRQSGKYSNL EELIIFNPKA ILPCFVVIYE 420 ALQT

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MALSTSLAIN AEKSRKMKPI NTKRRKKHQN PPPSQPPPPP PTSAQSSWDQ IKNLITCKQV  60
EATRVHEPTK RSPANLKLVS SCSSICRFRD VVHGNAKIVH RPDNSPETSS LGQETRLLTT  120
KATNGSSSRS LSAPTRTKNG ASASYSSSSS SSRGLQLRKL SGCYECHTII EPSRYPIPRS  180
SICPCPQCGE MFPKMESLEL HQAVRHAVSE LGPDDSGRNI VEIIFKSSWL KIDRPICKIE  240
RILKVHNTQR TIQRFEDCRD AVKTRALACA RKNPRCAADG NELLRFHCSE LLCDLGSRGS  300
TGLCGSIPGC RVCSVIRHGF QCKPGEPAGV RTTASSGRAH DSFECGDGRR RAMLVCRVIA  360
GRVKRIAEDL SAAAVEEENL SAAAASYDSV SRQSGKYSNL EELIIFNPKA ILPCFVVIYE  420
ALQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-164	C2H2 family protein