PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525289.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 349aa MW: 38748 Da PI: 7.7584

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.3	3.7e-25	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_023525289.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119 79***************************************997 PP
2	QLQ	62.1	1.4e-21	10	45	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT++Q+q+L++Q+l++Ky+++++P+Pp+L++ ++ XP_023525289.1 10 SPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVK 45 89******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MNSGPKPCIS PFTPTQWQEL EHQALIFKYM VSGVPIPPDL IFSVKRSLDS SISARLFPHQ 60 PIGWGCFEMG FGRKADPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEI 120 SSTPPAQTPP PLILTSTRSL SASSPTSSSY SLSTLSSSSS LTCETQSYHQ TPAPAAYQES 180 SIHPYLYPQS SSSRPPCSDF SPNSTNPQLF LYSGTHPQAD KDYRDINGPR EGVGVQAFFP 240 SVADSARSIG EVYSQPIGMD SYKGFSHAVS NSHQIYSSKQ ARQQQEQHCF VLGTDFNKST 300 RSAKTEEEDD AETQKPLLHF FEDCPPKNSD SWLDLATNSS IQSGNFIGL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MNSGPKPCIS PFTPTQWQEL EHQALIFKYM VSGVPIPPDL IFSVKRSLDS SISARLFPHQ  60
PIGWGCFEMG FGRKADPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEI  120
SSTPPAQTPP PLILTSTRSL SASSPTSSSY SLSTLSSSSS LTCETQSYHQ TPAPAAYQES  180
SIHPYLYPQS SSSRPPCSDF SPNSTNPQLF LYSGTHPQAD KDYRDINGPR EGVGVQAFFP  240
SVADSARSIG EVYSQPIGMD SYKGFSHAVS NSHQIYSSKQ ARQQQEQHCF VLGTDFNKST  300
RSAKTEEEDD AETQKPLLHF FEDCPPKNSD SWLDLATNSS IQSGNFIGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-66	GRF family protein