PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023525090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22438.2 Da PI: 7.8494 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.2e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + p++q +++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_023525090.1 2 SCNGCRVLRKGCSEACVLRSSLhwidsPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelal 96 +ae++l XP_023525090.1 97 AAETVL 102 **9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MSCNGCRVLR KGCSEACVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLLS FISAVPHHQR 60 SALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCQAAAET VLRGGVPRAN LGIEFSGNPT 120 AETESSLSLN TDVWTSTTQN IQFYPSSQFD SRRLSDLSLA TGKGKTHPLE NRRSLDSEES 180 VMTSFGSADH SDGDRRKERK LLNLFI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 201 | DRRKERKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-61 | LBD family protein |